Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13155

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13150 and A4249_RS13155 are separated by 148 nucleotidesA4249_RS13155 and A4249_RS13160 overlap by 4 nucleotidesA4249_RS13160 and A4249_RS13165 are separated by 47 nucleotides A4249_RS13150: A4249_RS13150 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 2,646,233 to 2,647,837 _RS13150 A4249_RS13155: A4249_RS13155 - heparinase II/III family protein, at 2,647,986 to 2,649,833 _RS13155 A4249_RS13160: A4249_RS13160 - ribulose-phosphate 3-epimerase, at 2,649,830 to 2,650,495 _RS13160 A4249_RS13165: A4249_RS13165 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 2,650,543 to 2,651,880 _RS13165 Position (kb) 2647 2648 2649 2650Strain fitness (log2 ratio) -2 -1 0 1at 2647.881 kb on - strandat 2647.959 kb on - strandat 2647.959 kb on - strandat 2648.108 kb on + strandat 2648.109 kb on - strandat 2648.251 kb on + strand, within A4249_RS13155at 2648.251 kb on + strand, within A4249_RS13155at 2648.251 kb on + strand, within A4249_RS13155at 2648.252 kb on - strand, within A4249_RS13155at 2648.252 kb on - strand, within A4249_RS13155at 2648.252 kb on - strand, within A4249_RS13155at 2648.344 kb on + strand, within A4249_RS13155at 2648.344 kb on + strand, within A4249_RS13155at 2648.344 kb on + strand, within A4249_RS13155at 2648.344 kb on + strand, within A4249_RS13155at 2648.345 kb on - strand, within A4249_RS13155at 2648.345 kb on - strand, within A4249_RS13155at 2648.345 kb on - strand, within A4249_RS13155at 2648.766 kb on + strand, within A4249_RS13155at 2648.766 kb on + strand, within A4249_RS13155at 2648.767 kb on - strand, within A4249_RS13155at 2648.767 kb on - strand, within A4249_RS13155at 2649.206 kb on + strand, within A4249_RS13155at 2649.643 kb on + strand, within A4249_RS13155at 2649.643 kb on + strand, within A4249_RS13155at 2649.644 kb on - strand, within A4249_RS13155at 2650.763 kb on + strand, within A4249_RS13165at 2650.763 kb on + strand, within A4249_RS13165at 2650.763 kb on + strand, within A4249_RS13165at 2650.763 kb on + strand, within A4249_RS13165at 2650.763 kb on + strand, within A4249_RS13165at 2650.763 kb on + strand, within A4249_RS13165at 2650.764 kb on - strand, within A4249_RS13165at 2650.764 kb on - strand, within A4249_RS13165at 2650.764 kb on - strand, within A4249_RS13165at 2650.764 kb on - strand, within A4249_RS13165at 2650.764 kb on - strand, within A4249_RS13165at 2650.764 kb on - strand, within A4249_RS13165

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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2,647,881 - +0.0
2,647,959 - +0.9
2,647,959 - -1.2
2,648,108 + +0.6
2,648,109 - -0.3
2,648,251 + A4249_RS13155 0.14 +0.2
2,648,251 + A4249_RS13155 0.14 -1.0
2,648,251 + A4249_RS13155 0.14 +0.8
2,648,252 - A4249_RS13155 0.14 +0.1
2,648,252 - A4249_RS13155 0.14 +1.4
2,648,252 - A4249_RS13155 0.14 +0.3
2,648,344 + A4249_RS13155 0.19 +0.0
2,648,344 + A4249_RS13155 0.19 -0.1
2,648,344 + A4249_RS13155 0.19 -0.1
2,648,344 + A4249_RS13155 0.19 -0.9
2,648,345 - A4249_RS13155 0.19 +0.9
2,648,345 - A4249_RS13155 0.19 -0.2
2,648,345 - A4249_RS13155 0.19 +1.2
2,648,766 + A4249_RS13155 0.42 +0.5
2,648,766 + A4249_RS13155 0.42 +0.2
2,648,767 - A4249_RS13155 0.42 +0.4
2,648,767 - A4249_RS13155 0.42 -0.2
2,649,206 + A4249_RS13155 0.66 -0.7
2,649,643 + A4249_RS13155 0.90 +0.2
2,649,643 + A4249_RS13155 0.90 +0.2
2,649,644 - A4249_RS13155 0.90 +0.4
2,650,763 + A4249_RS13165 0.16 -2.1
2,650,763 + A4249_RS13165 0.16 -0.8
2,650,763 + A4249_RS13165 0.16 +0.8
2,650,763 + A4249_RS13165 0.16 +0.5
2,650,763 + A4249_RS13165 0.16 -0.3
2,650,763 + A4249_RS13165 0.16 -0.6
2,650,764 - A4249_RS13165 0.17 +0.8
2,650,764 - A4249_RS13165 0.17 -0.1
2,650,764 - A4249_RS13165 0.17 -0.0
2,650,764 - A4249_RS13165 0.17 +0.2
2,650,764 - A4249_RS13165 0.17 +1.3
2,650,764 - A4249_RS13165 0.17 +0.3

Or see this region's nucleotide sequence