Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10715

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10705 and A4249_RS10710 overlap by 7 nucleotidesA4249_RS10710 and A4249_RS10715 are separated by 31 nucleotidesA4249_RS10715 and A4249_RS10720 overlap by 4 nucleotidesA4249_RS10720 and A4249_RS10725 are separated by 48 nucleotides A4249_RS10705: A4249_RS10705 - imidazole glycerol phosphate synthase subunit HisH, at 2,152,517 to 2,153,119 _RS10705 A4249_RS10710: A4249_RS10710 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 2,153,113 to 2,153,850 _RS10710 A4249_RS10715: A4249_RS10715 - imidazole glycerol phosphate synthase subunit HisF, at 2,153,882 to 2,154,649 _RS10715 A4249_RS10720: A4249_RS10720 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 2,154,646 to 2,155,269 _RS10720 A4249_RS10725: A4249_RS10725 - glucose-6-phosphate dehydrogenase, at 2,155,318 to 2,156,778 _RS10725 Position (kb) 2153 2154 2155Strain fitness (log2 ratio) -1 0 1 2at 2152.935 kb on - strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.935 kb on - strand, within A4249_RS10705at 2152.940 kb on + strand, within A4249_RS10705at 2152.941 kb on - strand, within A4249_RS10705at 2152.941 kb on - strand, within A4249_RS10705at 2152.997 kb on + strand, within A4249_RS10705at 2152.998 kb on - strand, within A4249_RS10705at 2153.122 kb on + strandat 2153.123 kb on - strandat 2153.194 kb on + strand, within A4249_RS10710at 2153.195 kb on - strand, within A4249_RS10710at 2153.797 kb on + strandat 2153.916 kb on + strandat 2153.916 kb on + strandat 2153.917 kb on - strandat 2153.917 kb on - strandat 2154.029 kb on + strand, within A4249_RS10715at 2154.029 kb on + strand, within A4249_RS10715at 2154.029 kb on + strand, within A4249_RS10715at 2154.029 kb on + strand, within A4249_RS10715at 2154.029 kb on + strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.030 kb on - strand, within A4249_RS10715at 2154.068 kb on + strand, within A4249_RS10715at 2154.068 kb on + strand, within A4249_RS10715at 2154.069 kb on - strand, within A4249_RS10715at 2154.308 kb on + strand, within A4249_RS10715at 2154.308 kb on + strand, within A4249_RS10715at 2154.308 kb on + strand, within A4249_RS10715at 2154.308 kb on + strand, within A4249_RS10715at 2154.308 kb on + strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.309 kb on - strand, within A4249_RS10715at 2154.311 kb on - strand, within A4249_RS10715at 2154.311 kb on - strand, within A4249_RS10715at 2154.437 kb on + strand, within A4249_RS10715at 2154.438 kb on - strand, within A4249_RS10715at 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.744 kb on + strand, within A4249_RS10720at 2154.745 kb on - strand, within A4249_RS10720at 2154.745 kb on - strand, within A4249_RS10720at 2155.171 kb on + strand, within A4249_RS10720at 2155.171 kb on + strand, within A4249_RS10720at 2155.171 kb on + strand, within A4249_RS10720at 2155.171 kb on + strand, within A4249_RS10720at 2155.171 kb on + strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.201 kb on - strand, within A4249_RS10720at 2155.267 kb on + strandat 2155.274 kb on + strandat 2155.274 kb on + strandat 2155.274 kb on + strandat 2155.274 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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2,152,935 - A4249_RS10705 0.69 +0.5
2,152,935 - A4249_RS10705 0.69 -0.6
2,152,935 - A4249_RS10705 0.69 +0.2
2,152,935 - A4249_RS10705 0.69 -0.8
2,152,935 - A4249_RS10705 0.69 -0.9
2,152,935 - A4249_RS10705 0.69 +0.9
2,152,940 + A4249_RS10705 0.70 +0.6
2,152,941 - A4249_RS10705 0.70 -0.1
2,152,941 - A4249_RS10705 0.70 -0.1
2,152,997 + A4249_RS10705 0.80 +1.1
2,152,998 - A4249_RS10705 0.80 -1.3
2,153,122 + +0.1
2,153,123 - -0.3
2,153,194 + A4249_RS10710 0.11 -0.0
2,153,195 - A4249_RS10710 0.11 +0.4
2,153,797 + +0.6
2,153,916 + -0.1
2,153,916 + +0.4
2,153,917 - -1.0
2,153,917 - +0.3
2,154,029 + A4249_RS10715 0.19 +0.1
2,154,029 + A4249_RS10715 0.19 +0.2
2,154,029 + A4249_RS10715 0.19 -0.1
2,154,029 + A4249_RS10715 0.19 -0.4
2,154,029 + A4249_RS10715 0.19 -0.3
2,154,030 - A4249_RS10715 0.19 -0.4
2,154,030 - A4249_RS10715 0.19 -0.3
2,154,030 - A4249_RS10715 0.19 +0.1
2,154,030 - A4249_RS10715 0.19 -0.8
2,154,030 - A4249_RS10715 0.19 -1.1
2,154,030 - A4249_RS10715 0.19 -0.2
2,154,068 + A4249_RS10715 0.24 -0.5
2,154,068 + A4249_RS10715 0.24 -0.2
2,154,069 - A4249_RS10715 0.24 -1.3
2,154,308 + A4249_RS10715 0.55 -0.1
2,154,308 + A4249_RS10715 0.55 -1.1
2,154,308 + A4249_RS10715 0.55 -0.5
2,154,308 + A4249_RS10715 0.55 +0.7
2,154,308 + A4249_RS10715 0.55 -0.6
2,154,309 - A4249_RS10715 0.56 +0.3
2,154,309 - A4249_RS10715 0.56 -1.0
2,154,309 - A4249_RS10715 0.56 +0.1
2,154,309 - A4249_RS10715 0.56 +0.3
2,154,309 - A4249_RS10715 0.56 +0.0
2,154,309 - A4249_RS10715 0.56 -0.2
2,154,309 - A4249_RS10715 0.56 -0.2
2,154,309 - A4249_RS10715 0.56 -0.6
2,154,309 - A4249_RS10715 0.56 +0.6
2,154,309 - A4249_RS10715 0.56 -0.9
2,154,309 - A4249_RS10715 0.56 -1.2
2,154,309 - A4249_RS10715 0.56 -0.6
2,154,311 - A4249_RS10715 0.56 -0.7
2,154,311 - A4249_RS10715 0.56 -0.6
2,154,437 + A4249_RS10715 0.72 +0.2
2,154,438 - A4249_RS10715 0.72 +1.1
2,154,639 + +2.4
2,154,639 + +1.6
2,154,639 + +0.8
2,154,639 + -1.0
2,154,639 + +0.4
2,154,639 + -0.1
2,154,639 + -0.5
2,154,639 + +0.6
2,154,639 + -0.4
2,154,639 + -0.1
2,154,640 - +0.7
2,154,640 - +0.6
2,154,640 - +0.2
2,154,640 - +1.4
2,154,640 - +0.2
2,154,640 - +0.2
2,154,640 - +1.5
2,154,640 - -0.4
2,154,742 + A4249_RS10720 0.15 -0.4
2,154,742 + A4249_RS10720 0.15 -0.2
2,154,742 + A4249_RS10720 0.15 -1.1
2,154,742 + A4249_RS10720 0.15 -0.1
2,154,742 + A4249_RS10720 0.15 -1.0
2,154,742 + A4249_RS10720 0.15 +0.4
2,154,742 + A4249_RS10720 0.15 +0.8
2,154,742 + A4249_RS10720 0.15 -0.4
2,154,743 - A4249_RS10720 0.16 +0.1
2,154,743 - A4249_RS10720 0.16 -0.1
2,154,743 - A4249_RS10720 0.16 -0.5
2,154,743 - A4249_RS10720 0.16 -0.8
2,154,743 - A4249_RS10720 0.16 +0.1
2,154,743 - A4249_RS10720 0.16 -0.1
2,154,743 - A4249_RS10720 0.16 +0.5
2,154,743 - A4249_RS10720 0.16 -0.5
2,154,743 - A4249_RS10720 0.16 +0.2
2,154,743 - A4249_RS10720 0.16 +0.3
2,154,743 - A4249_RS10720 0.16 -0.8
2,154,744 + A4249_RS10720 0.16 +1.3
2,154,745 - A4249_RS10720 0.16 -0.1
2,154,745 - A4249_RS10720 0.16 -1.1
2,155,171 + A4249_RS10720 0.84 +1.3
2,155,171 + A4249_RS10720 0.84 -0.0
2,155,171 + A4249_RS10720 0.84 +0.1
2,155,171 + A4249_RS10720 0.84 -0.3
2,155,171 + A4249_RS10720 0.84 -0.3
2,155,172 - A4249_RS10720 0.84 -0.0
2,155,172 - A4249_RS10720 0.84 -0.3
2,155,172 - A4249_RS10720 0.84 -0.3
2,155,172 - A4249_RS10720 0.84 -0.2
2,155,172 - A4249_RS10720 0.84 -0.2
2,155,172 - A4249_RS10720 0.84 +0.4
2,155,172 - A4249_RS10720 0.84 -0.5
2,155,172 - A4249_RS10720 0.84 +0.3
2,155,201 - A4249_RS10720 0.89 -0.6
2,155,267 + -0.1
2,155,274 + +0.9
2,155,274 + -0.6
2,155,274 + +0.2
2,155,274 + -0.8

Or see this region's nucleotide sequence