Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10270

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10265 and A4249_RS10270 are separated by 153 nucleotidesA4249_RS10270 and A4249_RS10275 overlap by 4 nucleotidesA4249_RS10275 and A4249_RS10280 are separated by 84 nucleotides A4249_RS10265: A4249_RS10265 - hypothetical protein, at 2,061,121 to 2,062,110 _RS10265 A4249_RS10270: A4249_RS10270 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 2,062,264 to 2,063,559 _RS10270 A4249_RS10275: A4249_RS10275 - Lrp/AsnC family transcriptional regulator, at 2,063,556 to 2,064,038 _RS10275 A4249_RS10280: A4249_RS10280 - DMT family transporter, at 2,064,123 to 2,065,031 _RS10280 Position (kb) 2062 2063 2064Strain fitness (log2 ratio) -2 -1 0 1 2at 2061.472 kb on + strand, within A4249_RS10265at 2061.472 kb on + strand, within A4249_RS10265at 2061.472 kb on + strand, within A4249_RS10265at 2061.472 kb on + strand, within A4249_RS10265at 2061.472 kb on + strand, within A4249_RS10265at 2061.473 kb on - strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.538 kb on + strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.539 kb on - strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.540 kb on + strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.541 kb on - strand, within A4249_RS10265at 2061.898 kb on + strand, within A4249_RS10265at 2061.899 kb on - strand, within A4249_RS10265at 2061.899 kb on - strand, within A4249_RS10265at 2061.944 kb on - strand, within A4249_RS10265at 2061.971 kb on - strand, within A4249_RS10265at 2061.971 kb on - strand, within A4249_RS10265at 2062.108 kb on + strandat 2062.108 kb on + strandat 2062.218 kb on + strandat 2062.219 kb on - strandat 2062.228 kb on + strandat 2062.228 kb on + strandat 2062.228 kb on + strandat 2062.228 kb on + strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.229 kb on - strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.230 kb on + strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.231 kb on - strandat 2062.685 kb on - strand, within A4249_RS10270at 2062.976 kb on + strand, within A4249_RS10270at 2062.976 kb on + strand, within A4249_RS10270at 2062.977 kb on - strand, within A4249_RS10270at 2063.320 kb on + strand, within A4249_RS10270at 2063.320 kb on + strand, within A4249_RS10270at 2063.320 kb on + strand, within A4249_RS10270at 2063.320 kb on + strand, within A4249_RS10270at 2063.321 kb on - strand, within A4249_RS10270at 2063.321 kb on - strand, within A4249_RS10270at 2063.321 kb on - strand, within A4249_RS10270at 2063.321 kb on - strand, within A4249_RS10270at 2063.557 kb on + strandat 2063.557 kb on + strandat 2063.557 kb on + strandat 2063.557 kb on + strandat 2063.558 kb on - strandat 2063.558 kb on - strandat 2063.558 kb on - strandat 2063.558 kb on - strandat 2063.660 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.674 kb on + strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.675 kb on - strand, within A4249_RS10275at 2063.710 kb on + strand, within A4249_RS10275at 2063.711 kb on - strand, within A4249_RS10275at 2063.711 kb on - strand, within A4249_RS10275at 2063.711 kb on - strand, within A4249_RS10275at 2064.002 kb on + strandat 2064.003 kb on - strandat 2064.003 kb on - strandat 2064.003 kb on - strandat 2064.003 kb on - strandat 2064.040 kb on - strandat 2064.107 kb on - strandat 2064.111 kb on + strandat 2064.111 kb on + strandat 2064.111 kb on + strandat 2064.111 kb on + strandat 2064.111 kb on + strandat 2064.112 kb on - strandat 2064.112 kb on - strandat 2064.112 kb on - strandat 2064.112 kb on - strandat 2064.112 kb on - strandat 2064.118 kb on - strandat 2064.184 kb on - strandat 2064.204 kb on - strandat 2064.279 kb on + strand, within A4249_RS10280at 2064.372 kb on + strand, within A4249_RS10280at 2064.408 kb on + strand, within A4249_RS10280at 2064.408 kb on + strand, within A4249_RS10280at 2064.408 kb on + strand, within A4249_RS10280at 2064.408 kb on + strand, within A4249_RS10280at 2064.409 kb on - strand, within A4249_RS10280at 2064.409 kb on - strand, within A4249_RS10280at 2064.409 kb on - strand, within A4249_RS10280at 2064.409 kb on - strand, within A4249_RS10280at 2064.409 kb on - strand, within A4249_RS10280

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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2,061,472 + A4249_RS10265 0.35 +0.3
2,061,472 + A4249_RS10265 0.35 -0.1
2,061,472 + A4249_RS10265 0.35 -0.2
2,061,472 + A4249_RS10265 0.35 +0.4
2,061,472 + A4249_RS10265 0.35 -0.7
2,061,473 - A4249_RS10265 0.36 +0.1
2,061,538 + A4249_RS10265 0.42 +0.2
2,061,538 + A4249_RS10265 0.42 +0.5
2,061,538 + A4249_RS10265 0.42 -0.1
2,061,538 + A4249_RS10265 0.42 +0.1
2,061,538 + A4249_RS10265 0.42 -0.1
2,061,538 + A4249_RS10265 0.42 -0.8
2,061,538 + A4249_RS10265 0.42 -0.8
2,061,538 + A4249_RS10265 0.42 -1.0
2,061,539 - A4249_RS10265 0.42 -0.1
2,061,539 - A4249_RS10265 0.42 -0.1
2,061,539 - A4249_RS10265 0.42 -1.0
2,061,539 - A4249_RS10265 0.42 +0.0
2,061,539 - A4249_RS10265 0.42 -0.2
2,061,539 - A4249_RS10265 0.42 +0.4
2,061,539 - A4249_RS10265 0.42 -1.4
2,061,540 + A4249_RS10265 0.42 -1.3
2,061,540 + A4249_RS10265 0.42 +0.2
2,061,540 + A4249_RS10265 0.42 +0.9
2,061,540 + A4249_RS10265 0.42 +0.3
2,061,540 + A4249_RS10265 0.42 +0.0
2,061,540 + A4249_RS10265 0.42 -0.1
2,061,540 + A4249_RS10265 0.42 -1.2
2,061,540 + A4249_RS10265 0.42 -0.8
2,061,540 + A4249_RS10265 0.42 +0.0
2,061,540 + A4249_RS10265 0.42 -0.2
2,061,540 + A4249_RS10265 0.42 -0.2
2,061,540 + A4249_RS10265 0.42 -1.2
2,061,540 + A4249_RS10265 0.42 -0.1
2,061,540 + A4249_RS10265 0.42 -0.5
2,061,541 - A4249_RS10265 0.42 -0.1
2,061,541 - A4249_RS10265 0.42 +0.0
2,061,541 - A4249_RS10265 0.42 -0.7
2,061,541 - A4249_RS10265 0.42 -0.8
2,061,541 - A4249_RS10265 0.42 -0.6
2,061,541 - A4249_RS10265 0.42 -0.0
2,061,541 - A4249_RS10265 0.42 -0.4
2,061,541 - A4249_RS10265 0.42 +0.0
2,061,898 + A4249_RS10265 0.78 -0.2
2,061,899 - A4249_RS10265 0.79 -0.4
2,061,899 - A4249_RS10265 0.79 -0.2
2,061,944 - A4249_RS10265 0.83 +0.2
2,061,971 - A4249_RS10265 0.86 -0.1
2,061,971 - A4249_RS10265 0.86 +0.1
2,062,108 + +0.0
2,062,108 + -0.1
2,062,218 + -1.9
2,062,219 - +0.0
2,062,228 + +1.2
2,062,228 + -1.6
2,062,228 + +0.4
2,062,228 + -0.5
2,062,229 - -1.9
2,062,229 - -0.2
2,062,229 - +0.2
2,062,229 - -0.7
2,062,229 - +0.5
2,062,229 - +1.1
2,062,229 - +0.5
2,062,229 - +1.0
2,062,229 - -0.6
2,062,229 - +0.4
2,062,229 - +0.5
2,062,229 - +0.7
2,062,229 - -1.3
2,062,229 - +0.2
2,062,230 + +0.6
2,062,230 + +0.4
2,062,230 + +0.4
2,062,230 + -0.3
2,062,230 + -0.7
2,062,230 + -0.6
2,062,230 + +0.0
2,062,230 + -0.1
2,062,230 + -0.0
2,062,230 + -0.6
2,062,231 - -0.2
2,062,231 - +1.0
2,062,231 - -0.2
2,062,231 - -0.7
2,062,231 - +0.4
2,062,231 - +0.0
2,062,231 - -0.1
2,062,231 - -0.1
2,062,231 - -0.4
2,062,231 - +0.4
2,062,231 - +0.3
2,062,685 - A4249_RS10270 0.32 -0.1
2,062,976 + A4249_RS10270 0.55 -0.7
2,062,976 + A4249_RS10270 0.55 -0.2
2,062,977 - A4249_RS10270 0.55 +0.3
2,063,320 + A4249_RS10270 0.81 -0.1
2,063,320 + A4249_RS10270 0.81 +0.0
2,063,320 + A4249_RS10270 0.81 +0.5
2,063,320 + A4249_RS10270 0.81 -0.1
2,063,321 - A4249_RS10270 0.82 -0.1
2,063,321 - A4249_RS10270 0.82 +0.1
2,063,321 - A4249_RS10270 0.82 +0.2
2,063,321 - A4249_RS10270 0.82 -0.3
2,063,557 + -0.6
2,063,557 + +0.1
2,063,557 + -0.4
2,063,557 + +0.1
2,063,558 - -0.5
2,063,558 - -0.2
2,063,558 - -0.4
2,063,558 - -0.0
2,063,660 + A4249_RS10275 0.22 -2.1
2,063,674 + A4249_RS10275 0.24 +0.3
2,063,674 + A4249_RS10275 0.24 +0.1
2,063,674 + A4249_RS10275 0.24 +0.2
2,063,674 + A4249_RS10275 0.24 -0.2
2,063,674 + A4249_RS10275 0.24 +0.0
2,063,674 + A4249_RS10275 0.24 -0.6
2,063,675 - A4249_RS10275 0.25 -0.2
2,063,675 - A4249_RS10275 0.25 +0.6
2,063,675 - A4249_RS10275 0.25 +0.3
2,063,675 - A4249_RS10275 0.25 -0.2
2,063,675 - A4249_RS10275 0.25 -0.2
2,063,675 - A4249_RS10275 0.25 +0.5
2,063,710 + A4249_RS10275 0.32 +0.2
2,063,711 - A4249_RS10275 0.32 +0.3
2,063,711 - A4249_RS10275 0.32 +0.1
2,063,711 - A4249_RS10275 0.32 -0.7
2,064,002 + +1.0
2,064,003 - +0.7
2,064,003 - +0.8
2,064,003 - +0.6
2,064,003 - +0.3
2,064,040 - -0.2
2,064,107 - -0.4
2,064,111 + -0.1
2,064,111 + +0.5
2,064,111 + +0.1
2,064,111 + -0.8
2,064,111 + -0.1
2,064,112 - +0.2
2,064,112 - -0.6
2,064,112 - +2.2
2,064,112 - -0.3
2,064,112 - +0.4
2,064,118 - -0.1
2,064,184 - +0.8
2,064,204 - +1.1
2,064,279 + A4249_RS10280 0.17 -0.5
2,064,372 + A4249_RS10280 0.27 +0.9
2,064,408 + A4249_RS10280 0.31 +0.3
2,064,408 + A4249_RS10280 0.31 -0.5
2,064,408 + A4249_RS10280 0.31 -0.7
2,064,408 + A4249_RS10280 0.31 -0.2
2,064,409 - A4249_RS10280 0.31 -0.9
2,064,409 - A4249_RS10280 0.31 +0.3
2,064,409 - A4249_RS10280 0.31 +0.1
2,064,409 - A4249_RS10280 0.31 -0.3
2,064,409 - A4249_RS10280 0.31 -0.7

Or see this region's nucleotide sequence