Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09680

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09675 and A4249_RS09680 are separated by 124 nucleotidesA4249_RS09680 and A4249_RS09685 are separated by 45 nucleotidesA4249_RS09685 and A4249_RS09690 are separated by 5 nucleotides A4249_RS09675: A4249_RS09675 - siroheme synthase CysG, at 1,929,072 to 1,930,454 _RS09675 A4249_RS09680: A4249_RS09680 - transcriptional regulator GcvA, at 1,930,579 to 1,931,508 _RS09680 A4249_RS09685: A4249_RS09685 - NYN domain-containing protein, at 1,931,554 to 1,932,285 _RS09685 A4249_RS09690: A4249_RS09690 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,932,291 to 1,934,204 _RS09690 Position (kb) 1930 1931 1932Strain fitness (log2 ratio) -2 -1 0 1at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.661 kb on + strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.662 kb on - strand, within A4249_RS09675at 1929.803 kb on + strand, within A4249_RS09675at 1929.803 kb on + strand, within A4249_RS09675at 1929.804 kb on - strand, within A4249_RS09675at 1929.804 kb on - strand, within A4249_RS09675at 1929.804 kb on - strand, within A4249_RS09675at 1929.804 kb on - strand, within A4249_RS09675at 1929.968 kb on + strand, within A4249_RS09675at 1929.969 kb on - strand, within A4249_RS09675at 1930.044 kb on - strand, within A4249_RS09675at 1930.446 kb on + strandat 1930.446 kb on + strandat 1930.446 kb on + strandat 1930.446 kb on + strandat 1930.446 kb on + strandat 1930.446 kb on + strandat 1930.446 kb on + strandat 1930.446 kb on + strandat 1930.447 kb on - strandat 1930.447 kb on - strandat 1930.447 kb on - strandat 1930.562 kb on + strandat 1930.572 kb on - strandat 1931.017 kb on + strand, within A4249_RS09680at 1931.145 kb on + strand, within A4249_RS09680at 1931.145 kb on + strand, within A4249_RS09680at 1931.145 kb on + strand, within A4249_RS09680at 1931.145 kb on + strand, within A4249_RS09680at 1931.145 kb on + strand, within A4249_RS09680at 1931.145 kb on + strand, within A4249_RS09680at 1931.145 kb on + strand, within A4249_RS09680at 1931.145 kb on + strand, within A4249_RS09680at 1931.145 kb on + strand, within A4249_RS09680at 1931.146 kb on - strand, within A4249_RS09680at 1931.146 kb on - strand, within A4249_RS09680at 1931.146 kb on - strand, within A4249_RS09680at 1931.146 kb on - strand, within A4249_RS09680at 1931.146 kb on - strand, within A4249_RS09680at 1931.146 kb on - strand, within A4249_RS09680at 1931.146 kb on - strand, within A4249_RS09680at 1931.146 kb on - strand, within A4249_RS09680at 1931.146 kb on - strand, within A4249_RS09680at 1931.303 kb on + strand, within A4249_RS09680at 1931.304 kb on - strand, within A4249_RS09680at 1931.398 kb on + strand, within A4249_RS09680at 1931.398 kb on + strand, within A4249_RS09680at 1931.398 kb on + strand, within A4249_RS09680at 1931.399 kb on - strand, within A4249_RS09680at 1931.399 kb on - strand, within A4249_RS09680at 1931.399 kb on - strand, within A4249_RS09680at 1931.399 kb on - strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.491 kb on - strandat 1931.491 kb on - strandat 1931.491 kb on - strandat 1931.491 kb on - strandat 1931.491 kb on - strandat 1931.506 kb on + strandat 1931.506 kb on + strandat 1931.506 kb on + strandat 1931.506 kb on + strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.677 kb on + strand, within A4249_RS09685at 1931.678 kb on - strand, within A4249_RS09685at 1931.914 kb on + strand, within A4249_RS09685at 1931.914 kb on + strand, within A4249_RS09685at 1931.915 kb on - strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.976 kb on + strand, within A4249_RS09685at 1931.976 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.194 kb on - strand, within A4249_RS09685at 1932.194 kb on - strand, within A4249_RS09685at 1932.293 kb on - strandat 1932.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,929,661 + A4249_RS09675 0.43 -0.4
1,929,661 + A4249_RS09675 0.43 -0.1
1,929,661 + A4249_RS09675 0.43 +0.1
1,929,661 + A4249_RS09675 0.43 +0.0
1,929,661 + A4249_RS09675 0.43 +0.4
1,929,661 + A4249_RS09675 0.43 +0.5
1,929,661 + A4249_RS09675 0.43 +0.4
1,929,661 + A4249_RS09675 0.43 -0.6
1,929,661 + A4249_RS09675 0.43 +1.2
1,929,661 + A4249_RS09675 0.43 -0.2
1,929,661 + A4249_RS09675 0.43 +0.2
1,929,661 + A4249_RS09675 0.43 -1.2
1,929,662 - A4249_RS09675 0.43 +0.2
1,929,662 - A4249_RS09675 0.43 +1.3
1,929,662 - A4249_RS09675 0.43 +0.4
1,929,662 - A4249_RS09675 0.43 -0.2
1,929,662 - A4249_RS09675 0.43 +0.0
1,929,662 - A4249_RS09675 0.43 +0.3
1,929,662 - A4249_RS09675 0.43 -0.7
1,929,662 - A4249_RS09675 0.43 -0.4
1,929,662 - A4249_RS09675 0.43 -0.8
1,929,662 - A4249_RS09675 0.43 +0.3
1,929,662 - A4249_RS09675 0.43 -0.5
1,929,662 - A4249_RS09675 0.43 -0.1
1,929,662 - A4249_RS09675 0.43 -0.5
1,929,803 + A4249_RS09675 0.53 -0.2
1,929,803 + A4249_RS09675 0.53 -1.0
1,929,804 - A4249_RS09675 0.53 -0.5
1,929,804 - A4249_RS09675 0.53 +1.5
1,929,804 - A4249_RS09675 0.53 -0.3
1,929,804 - A4249_RS09675 0.53 -0.2
1,929,968 + A4249_RS09675 0.65 -0.4
1,929,969 - A4249_RS09675 0.65 +0.5
1,930,044 - A4249_RS09675 0.70 -0.7
1,930,446 + +0.1
1,930,446 + -0.4
1,930,446 + -0.0
1,930,446 + -0.7
1,930,446 + -0.3
1,930,446 + +0.8
1,930,446 + -0.5
1,930,446 + +0.0
1,930,447 - -1.2
1,930,447 - +0.3
1,930,447 - -0.9
1,930,562 + -0.8
1,930,572 - -0.2
1,931,017 + A4249_RS09680 0.47 -0.3
1,931,145 + A4249_RS09680 0.61 -0.1
1,931,145 + A4249_RS09680 0.61 +0.5
1,931,145 + A4249_RS09680 0.61 -0.6
1,931,145 + A4249_RS09680 0.61 -0.2
1,931,145 + A4249_RS09680 0.61 +0.9
1,931,145 + A4249_RS09680 0.61 -0.1
1,931,145 + A4249_RS09680 0.61 -0.0
1,931,145 + A4249_RS09680 0.61 -0.5
1,931,145 + A4249_RS09680 0.61 -0.4
1,931,146 - A4249_RS09680 0.61 -0.2
1,931,146 - A4249_RS09680 0.61 -0.0
1,931,146 - A4249_RS09680 0.61 -0.2
1,931,146 - A4249_RS09680 0.61 -0.4
1,931,146 - A4249_RS09680 0.61 -0.8
1,931,146 - A4249_RS09680 0.61 +0.4
1,931,146 - A4249_RS09680 0.61 +0.5
1,931,146 - A4249_RS09680 0.61 -0.5
1,931,146 - A4249_RS09680 0.61 -0.1
1,931,303 + A4249_RS09680 0.78 +0.6
1,931,304 - A4249_RS09680 0.78 +1.5
1,931,398 + A4249_RS09680 0.88 +0.5
1,931,398 + A4249_RS09680 0.88 -0.0
1,931,398 + A4249_RS09680 0.88 +0.7
1,931,399 - A4249_RS09680 0.88 -1.6
1,931,399 - A4249_RS09680 0.88 +0.8
1,931,399 - A4249_RS09680 0.88 -0.8
1,931,399 - A4249_RS09680 0.88 -1.0
1,931,401 + A4249_RS09680 0.88 -0.7
1,931,401 + A4249_RS09680 0.88 -0.9
1,931,401 + A4249_RS09680 0.88 +0.5
1,931,401 + A4249_RS09680 0.88 +0.7
1,931,401 + A4249_RS09680 0.88 -0.1
1,931,401 + A4249_RS09680 0.88 +0.1
1,931,401 + A4249_RS09680 0.88 +1.5
1,931,401 + A4249_RS09680 0.88 +0.5
1,931,401 + A4249_RS09680 0.88 -0.5
1,931,401 + A4249_RS09680 0.88 -0.7
1,931,401 + A4249_RS09680 0.88 +0.1
1,931,402 - A4249_RS09680 0.88 -0.3
1,931,402 - A4249_RS09680 0.88 +0.2
1,931,402 - A4249_RS09680 0.88 -0.4
1,931,402 - A4249_RS09680 0.88 -0.3
1,931,402 - A4249_RS09680 0.88 -0.8
1,931,402 - A4249_RS09680 0.88 +0.7
1,931,402 - A4249_RS09680 0.88 +0.9
1,931,490 + +0.1
1,931,490 + +0.3
1,931,490 + -0.9
1,931,490 + -0.1
1,931,490 + +0.0
1,931,490 + +0.1
1,931,490 + +0.8
1,931,490 + -1.2
1,931,490 + -0.2
1,931,491 - -0.9
1,931,491 - -0.1
1,931,491 - -0.0
1,931,491 - +0.5
1,931,491 - -1.2
1,931,506 + -0.7
1,931,506 + -0.5
1,931,506 + -0.0
1,931,506 + +1.0
1,931,507 - -0.5
1,931,507 - -0.1
1,931,507 - -0.3
1,931,507 - -0.2
1,931,507 - -1.2
1,931,507 - +0.0
1,931,507 - -0.7
1,931,677 + A4249_RS09685 0.17 +1.7
1,931,678 - A4249_RS09685 0.17 +0.1
1,931,914 + A4249_RS09685 0.49 -0.0
1,931,914 + A4249_RS09685 0.49 +0.3
1,931,915 - A4249_RS09685 0.49 -0.1
1,931,974 + A4249_RS09685 0.57 +0.3
1,931,974 + A4249_RS09685 0.57 +0.4
1,931,974 + A4249_RS09685 0.57 +0.9
1,931,974 + A4249_RS09685 0.57 +0.9
1,931,974 + A4249_RS09685 0.57 -0.1
1,931,974 + A4249_RS09685 0.57 -0.7
1,931,974 + A4249_RS09685 0.57 -1.1
1,931,974 + A4249_RS09685 0.57 +0.2
1,931,974 + A4249_RS09685 0.57 +0.0
1,931,975 - A4249_RS09685 0.58 +1.3
1,931,975 - A4249_RS09685 0.58 -0.7
1,931,975 - A4249_RS09685 0.58 -1.3
1,931,975 - A4249_RS09685 0.58 -0.6
1,931,975 - A4249_RS09685 0.58 +0.6
1,931,975 - A4249_RS09685 0.58 -0.4
1,931,975 - A4249_RS09685 0.58 -0.3
1,931,976 + A4249_RS09685 0.58 +0.1
1,931,976 + A4249_RS09685 0.58 +0.1
1,932,187 + A4249_RS09685 0.86 -1.4
1,932,187 + A4249_RS09685 0.86 -0.7
1,932,187 + A4249_RS09685 0.86 -0.5
1,932,187 + A4249_RS09685 0.86 -1.1
1,932,187 + A4249_RS09685 0.86 -1.8
1,932,187 + A4249_RS09685 0.86 +0.3
1,932,187 + A4249_RS09685 0.86 +0.1
1,932,187 + A4249_RS09685 0.86 -0.2
1,932,187 + A4249_RS09685 0.86 +0.6
1,932,187 + A4249_RS09685 0.86 -0.9
1,932,187 + A4249_RS09685 0.86 -0.2
1,932,187 + A4249_RS09685 0.86 +0.6
1,932,187 + A4249_RS09685 0.86 -0.1
1,932,187 + A4249_RS09685 0.86 +0.4
1,932,187 + A4249_RS09685 0.86 -0.6
1,932,187 + A4249_RS09685 0.86 +0.4
1,932,187 + A4249_RS09685 0.86 +0.7
1,932,187 + A4249_RS09685 0.86 -1.4
1,932,188 - A4249_RS09685 0.87 +0.3
1,932,188 - A4249_RS09685 0.87 -0.3
1,932,188 - A4249_RS09685 0.87 +0.5
1,932,188 - A4249_RS09685 0.87 +1.3
1,932,188 - A4249_RS09685 0.87 +1.4
1,932,188 - A4249_RS09685 0.87 -1.3
1,932,194 - A4249_RS09685 0.87 +0.3
1,932,194 - A4249_RS09685 0.87 +0.4
1,932,293 - +0.2
1,932,293 - -0.7

Or see this region's nucleotide sequence