Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08560

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08555 and A4249_RS08560 are separated by 6 nucleotidesA4249_RS08560 and A4249_RS08565 are separated by 175 nucleotidesA4249_RS08565 and A4249_RS08570 are separated by 25 nucleotides A4249_RS08555: A4249_RS08555 - EAL domain-containing protein, at 1,713,575 to 1,715,152 _RS08555 A4249_RS08560: A4249_RS08560 - ABC-F family ATP-binding cassette domain-containing protein, at 1,715,159 to 1,716,769 _RS08560 A4249_RS08565: A4249_RS08565 - hypothetical protein, at 1,716,945 to 1,717,379 _RS08565 A4249_RS08570: A4249_RS08570 - group III truncated hemoglobin, at 1,717,405 to 1,717,899 _RS08570 Position (kb) 1715 1716 1717Strain fitness (log2 ratio) -2 -1 0 1at 1714.670 kb on + strand, within A4249_RS08555at 1714.670 kb on + strand, within A4249_RS08555at 1714.670 kb on + strand, within A4249_RS08555at 1714.670 kb on + strand, within A4249_RS08555at 1714.670 kb on + strand, within A4249_RS08555at 1714.670 kb on + strand, within A4249_RS08555at 1714.670 kb on + strand, within A4249_RS08555at 1714.670 kb on + strand, within A4249_RS08555at 1714.671 kb on - strand, within A4249_RS08555at 1714.671 kb on - strand, within A4249_RS08555at 1714.671 kb on - strand, within A4249_RS08555at 1714.671 kb on - strand, within A4249_RS08555at 1714.671 kb on - strand, within A4249_RS08555at 1714.671 kb on - strand, within A4249_RS08555at 1714.671 kb on - strand, within A4249_RS08555at 1714.856 kb on + strand, within A4249_RS08555at 1714.856 kb on + strand, within A4249_RS08555at 1714.856 kb on + strand, within A4249_RS08555at 1714.856 kb on + strand, within A4249_RS08555at 1714.856 kb on + strand, within A4249_RS08555at 1714.857 kb on - strand, within A4249_RS08555at 1715.238 kb on + strandat 1715.238 kb on + strandat 1715.239 kb on - strandat 1715.461 kb on + strand, within A4249_RS08560at 1715.792 kb on + strand, within A4249_RS08560at 1715.793 kb on - strand, within A4249_RS08560at 1715.793 kb on - strand, within A4249_RS08560at 1715.999 kb on - strand, within A4249_RS08560at 1715.999 kb on - strand, within A4249_RS08560at 1716.072 kb on + strand, within A4249_RS08560at 1716.072 kb on + strand, within A4249_RS08560at 1716.072 kb on + strand, within A4249_RS08560at 1716.072 kb on + strand, within A4249_RS08560at 1716.072 kb on + strand, within A4249_RS08560at 1716.072 kb on + strand, within A4249_RS08560at 1716.072 kb on + strand, within A4249_RS08560at 1716.072 kb on + strand, within A4249_RS08560at 1716.072 kb on + strand, within A4249_RS08560at 1716.073 kb on - strand, within A4249_RS08560at 1716.073 kb on - strand, within A4249_RS08560at 1716.073 kb on - strand, within A4249_RS08560at 1716.073 kb on - strand, within A4249_RS08560at 1716.094 kb on - strand, within A4249_RS08560at 1716.094 kb on - strand, within A4249_RS08560at 1716.476 kb on + strand, within A4249_RS08560at 1716.476 kb on + strand, within A4249_RS08560at 1716.476 kb on + strand, within A4249_RS08560at 1716.476 kb on + strand, within A4249_RS08560at 1716.476 kb on + strand, within A4249_RS08560at 1716.476 kb on + strand, within A4249_RS08560at 1716.476 kb on + strand, within A4249_RS08560at 1716.477 kb on - strand, within A4249_RS08560at 1716.477 kb on - strand, within A4249_RS08560at 1716.477 kb on - strand, within A4249_RS08560at 1716.519 kb on + strand, within A4249_RS08560at 1716.519 kb on + strand, within A4249_RS08560at 1716.519 kb on + strand, within A4249_RS08560at 1716.519 kb on + strand, within A4249_RS08560at 1716.876 kb on + strandat 1716.876 kb on + strandat 1716.877 kb on - strandat 1716.877 kb on - strandat 1717.036 kb on - strand, within A4249_RS08565at 1717.036 kb on - strand, within A4249_RS08565at 1717.119 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.152 kb on + strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.153 kb on - strand, within A4249_RS08565at 1717.154 kb on + strand, within A4249_RS08565at 1717.154 kb on + strand, within A4249_RS08565at 1717.154 kb on + strand, within A4249_RS08565at 1717.154 kb on + strand, within A4249_RS08565at 1717.154 kb on + strand, within A4249_RS08565at 1717.154 kb on + strand, within A4249_RS08565at 1717.154 kb on + strand, within A4249_RS08565at 1717.155 kb on - strand, within A4249_RS08565at 1717.155 kb on - strand, within A4249_RS08565at 1717.155 kb on - strand, within A4249_RS08565at 1717.163 kb on + strand, within A4249_RS08565at 1717.163 kb on + strand, within A4249_RS08565at 1717.164 kb on - strand, within A4249_RS08565at 1717.377 kb on + strandat 1717.377 kb on + strandat 1717.378 kb on - strandat 1717.378 kb on - strandat 1717.378 kb on - strandat 1717.378 kb on - strandat 1717.392 kb on + strandat 1717.531 kb on + strand, within A4249_RS08570at 1717.532 kb on - strand, within A4249_RS08570at 1717.532 kb on - strand, within A4249_RS08570at 1717.654 kb on + strand, within A4249_RS08570at 1717.654 kb on + strand, within A4249_RS08570at 1717.654 kb on + strand, within A4249_RS08570at 1717.655 kb on - strand, within A4249_RS08570

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,714,670 + A4249_RS08555 0.69 +0.2
1,714,670 + A4249_RS08555 0.69 -0.7
1,714,670 + A4249_RS08555 0.69 +0.1
1,714,670 + A4249_RS08555 0.69 +0.0
1,714,670 + A4249_RS08555 0.69 +1.1
1,714,670 + A4249_RS08555 0.69 -0.4
1,714,670 + A4249_RS08555 0.69 -0.2
1,714,670 + A4249_RS08555 0.69 +0.2
1,714,671 - A4249_RS08555 0.69 -0.3
1,714,671 - A4249_RS08555 0.69 +1.0
1,714,671 - A4249_RS08555 0.69 -0.2
1,714,671 - A4249_RS08555 0.69 +0.4
1,714,671 - A4249_RS08555 0.69 +0.3
1,714,671 - A4249_RS08555 0.69 -0.1
1,714,671 - A4249_RS08555 0.69 +0.8
1,714,856 + A4249_RS08555 0.81 +0.7
1,714,856 + A4249_RS08555 0.81 -1.2
1,714,856 + A4249_RS08555 0.81 +0.4
1,714,856 + A4249_RS08555 0.81 +0.8
1,714,856 + A4249_RS08555 0.81 -0.1
1,714,857 - A4249_RS08555 0.81 -0.7
1,715,238 + -0.2
1,715,238 + +0.2
1,715,239 - +0.2
1,715,461 + A4249_RS08560 0.19 +0.6
1,715,792 + A4249_RS08560 0.39 -1.0
1,715,793 - A4249_RS08560 0.39 -0.4
1,715,793 - A4249_RS08560 0.39 -1.1
1,715,999 - A4249_RS08560 0.52 -0.0
1,715,999 - A4249_RS08560 0.52 +0.7
1,716,072 + A4249_RS08560 0.57 -0.2
1,716,072 + A4249_RS08560 0.57 -0.4
1,716,072 + A4249_RS08560 0.57 +0.0
1,716,072 + A4249_RS08560 0.57 -0.8
1,716,072 + A4249_RS08560 0.57 +0.6
1,716,072 + A4249_RS08560 0.57 +0.7
1,716,072 + A4249_RS08560 0.57 -0.6
1,716,072 + A4249_RS08560 0.57 +0.4
1,716,072 + A4249_RS08560 0.57 +0.1
1,716,073 - A4249_RS08560 0.57 -0.5
1,716,073 - A4249_RS08560 0.57 +0.8
1,716,073 - A4249_RS08560 0.57 -0.6
1,716,073 - A4249_RS08560 0.57 -1.9
1,716,094 - A4249_RS08560 0.58 -0.3
1,716,094 - A4249_RS08560 0.58 -0.1
1,716,476 + A4249_RS08560 0.82 +0.4
1,716,476 + A4249_RS08560 0.82 -1.2
1,716,476 + A4249_RS08560 0.82 +0.4
1,716,476 + A4249_RS08560 0.82 -0.6
1,716,476 + A4249_RS08560 0.82 +0.1
1,716,476 + A4249_RS08560 0.82 +0.0
1,716,476 + A4249_RS08560 0.82 +0.1
1,716,477 - A4249_RS08560 0.82 -1.4
1,716,477 - A4249_RS08560 0.82 +0.4
1,716,477 - A4249_RS08560 0.82 -0.8
1,716,519 + A4249_RS08560 0.84 -0.5
1,716,519 + A4249_RS08560 0.84 +1.0
1,716,519 + A4249_RS08560 0.84 -2.4
1,716,519 + A4249_RS08560 0.84 -1.0
1,716,876 + -0.8
1,716,876 + -0.2
1,716,877 - +0.4
1,716,877 - -0.2
1,717,036 - A4249_RS08565 0.21 -0.4
1,717,036 - A4249_RS08565 0.21 -0.0
1,717,119 + A4249_RS08565 0.40 +0.4
1,717,152 + A4249_RS08565 0.48 +1.2
1,717,152 + A4249_RS08565 0.48 -0.0
1,717,152 + A4249_RS08565 0.48 +0.5
1,717,152 + A4249_RS08565 0.48 -0.5
1,717,152 + A4249_RS08565 0.48 +0.6
1,717,152 + A4249_RS08565 0.48 +0.7
1,717,152 + A4249_RS08565 0.48 +0.6
1,717,152 + A4249_RS08565 0.48 +0.0
1,717,152 + A4249_RS08565 0.48 +1.4
1,717,152 + A4249_RS08565 0.48 -0.8
1,717,152 + A4249_RS08565 0.48 +0.4
1,717,153 - A4249_RS08565 0.48 -0.0
1,717,153 - A4249_RS08565 0.48 +0.2
1,717,153 - A4249_RS08565 0.48 -1.2
1,717,153 - A4249_RS08565 0.48 +0.1
1,717,153 - A4249_RS08565 0.48 +0.3
1,717,153 - A4249_RS08565 0.48 -0.5
1,717,153 - A4249_RS08565 0.48 +0.9
1,717,153 - A4249_RS08565 0.48 +0.6
1,717,153 - A4249_RS08565 0.48 -1.8
1,717,153 - A4249_RS08565 0.48 -0.3
1,717,153 - A4249_RS08565 0.48 -0.0
1,717,153 - A4249_RS08565 0.48 +0.3
1,717,153 - A4249_RS08565 0.48 -0.1
1,717,153 - A4249_RS08565 0.48 -0.4
1,717,154 + A4249_RS08565 0.48 +0.2
1,717,154 + A4249_RS08565 0.48 -0.1
1,717,154 + A4249_RS08565 0.48 +0.5
1,717,154 + A4249_RS08565 0.48 -0.3
1,717,154 + A4249_RS08565 0.48 +1.1
1,717,154 + A4249_RS08565 0.48 +0.1
1,717,154 + A4249_RS08565 0.48 -0.6
1,717,155 - A4249_RS08565 0.48 +0.2
1,717,155 - A4249_RS08565 0.48 -1.7
1,717,155 - A4249_RS08565 0.48 -0.4
1,717,163 + A4249_RS08565 0.50 -0.1
1,717,163 + A4249_RS08565 0.50 -0.2
1,717,164 - A4249_RS08565 0.50 +0.6
1,717,377 + -0.4
1,717,377 + -0.1
1,717,378 - -0.3
1,717,378 - +0.6
1,717,378 - +1.1
1,717,378 - -0.0
1,717,392 + -0.2
1,717,531 + A4249_RS08570 0.25 -0.1
1,717,532 - A4249_RS08570 0.26 -0.3
1,717,532 - A4249_RS08570 0.26 +0.6
1,717,654 + A4249_RS08570 0.50 -0.6
1,717,654 + A4249_RS08570 0.50 -0.4
1,717,654 + A4249_RS08570 0.50 -0.2
1,717,655 - A4249_RS08570 0.51 +0.1

Or see this region's nucleotide sequence