Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07850

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07840 and A4249_RS07845 are separated by 0 nucleotidesA4249_RS07845 and A4249_RS07850 are separated by 279 nucleotidesA4249_RS07850 and A4249_RS07855 overlap by 4 nucleotidesA4249_RS07855 and A4249_RS07860 are separated by 17 nucleotides A4249_RS07840: A4249_RS07840 - DUF938 domain-containing protein, at 1,569,385 to 1,570,020 _RS07840 A4249_RS07845: A4249_RS07845 - hypothetical protein, at 1,570,021 to 1,570,512 _RS07845 A4249_RS07850: A4249_RS07850 - pseudouridine synthase, at 1,570,792 to 1,571,571 _RS07850 A4249_RS07855: A4249_RS07855 - ATPase, at 1,571,568 to 1,572,320 _RS07855 A4249_RS07860: A4249_RS07860 - putative 2OG-Fe(II) oxygenase, at 1,572,338 to 1,573,822 _RS07860 Position (kb) 1570 1571 1572Strain fitness (log2 ratio) -2 -1 0 1at 1569.821 kb on - strand, within A4249_RS07840at 1569.829 kb on + strand, within A4249_RS07840at 1570.291 kb on - strand, within A4249_RS07845at 1570.466 kb on + strandat 1570.466 kb on + strandat 1570.603 kb on + strandat 1570.659 kb on + strandat 1570.660 kb on - strandat 1570.661 kb on + strandat 1570.662 kb on - strandat 1570.662 kb on - strandat 1570.711 kb on - strandat 1570.714 kb on - strandat 1570.714 kb on - strandat 1570.714 kb on - strandat 1570.760 kb on - strandat 1570.760 kb on - strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.810 kb on + strandat 1570.811 kb on - strandat 1570.811 kb on - strandat 1570.811 kb on - strandat 1570.811 kb on - strandat 1570.811 kb on - strandat 1571.038 kb on + strand, within A4249_RS07850at 1571.038 kb on + strand, within A4249_RS07850at 1571.251 kb on + strand, within A4249_RS07850at 1571.251 kb on + strand, within A4249_RS07850at 1571.251 kb on + strand, within A4249_RS07850at 1571.251 kb on + strand, within A4249_RS07850at 1571.252 kb on - strand, within A4249_RS07850at 1571.252 kb on - strand, within A4249_RS07850at 1571.252 kb on - strand, within A4249_RS07850at 1571.252 kb on - strand, within A4249_RS07850at 1571.334 kb on - strand, within A4249_RS07850at 1571.398 kb on + strand, within A4249_RS07850at 1571.398 kb on + strand, within A4249_RS07850at 1571.398 kb on + strand, within A4249_RS07850at 1571.398 kb on + strand, within A4249_RS07850at 1571.399 kb on - strand, within A4249_RS07850at 1571.399 kb on - strand, within A4249_RS07850at 1571.399 kb on - strand, within A4249_RS07850at 1571.444 kb on + strand, within A4249_RS07850at 1571.444 kb on + strand, within A4249_RS07850at 1571.444 kb on + strand, within A4249_RS07850at 1571.444 kb on + strand, within A4249_RS07850at 1571.445 kb on - strand, within A4249_RS07850at 1571.445 kb on - strand, within A4249_RS07850at 1571.445 kb on - strand, within A4249_RS07850at 1571.445 kb on - strand, within A4249_RS07850at 1571.445 kb on - strand, within A4249_RS07850at 1571.445 kb on - strand, within A4249_RS07850at 1571.477 kb on + strand, within A4249_RS07850at 1571.570 kb on - strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.412 kb on + strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.413 kb on - strandat 1572.414 kb on + strandat 1572.414 kb on + strandat 1572.414 kb on + strandat 1572.414 kb on + strandat 1572.414 kb on + strandat 1572.414 kb on + strandat 1572.414 kb on + strandat 1572.414 kb on + strandat 1572.414 kb on + strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.415 kb on - strandat 1572.452 kb on + strandat 1572.452 kb on + strandat 1572.452 kb on + strandat 1572.452 kb on + strandat 1572.452 kb on + strandat 1572.452 kb on + strandat 1572.452 kb on + strandat 1572.452 kb on + strandat 1572.452 kb on + strandat 1572.452 kb on + strandat 1572.452 kb on + strandat 1572.453 kb on - strandat 1572.453 kb on - strandat 1572.453 kb on - strandat 1572.453 kb on - strandat 1572.453 kb on - strandat 1572.453 kb on - strandat 1572.453 kb on - strandat 1572.453 kb on - strandat 1572.453 kb on - strandat 1572.453 kb on - strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.456 kb on + strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strandat 1572.457 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,569,821 - A4249_RS07840 0.69 +0.9
1,569,829 + A4249_RS07840 0.70 +0.3
1,570,291 - A4249_RS07845 0.55 -0.7
1,570,466 + +0.1
1,570,466 + +0.9
1,570,603 + -1.2
1,570,659 + +0.2
1,570,660 - -0.1
1,570,661 + +0.6
1,570,662 - +0.8
1,570,662 - -0.8
1,570,711 - -0.8
1,570,714 - -1.4
1,570,714 - -1.7
1,570,714 - -0.3
1,570,760 - +1.1
1,570,760 - -1.8
1,570,810 + +1.2
1,570,810 + +0.5
1,570,810 + +0.7
1,570,810 + +0.2
1,570,810 + +0.2
1,570,810 + +0.2
1,570,810 + +0.5
1,570,810 + +0.8
1,570,810 + -0.2
1,570,810 + +0.3
1,570,810 + -0.0
1,570,810 + +0.0
1,570,810 + -0.1
1,570,811 - -0.4
1,570,811 - +0.4
1,570,811 - +0.7
1,570,811 - +0.0
1,570,811 - -1.9
1,571,038 + A4249_RS07850 0.32 +0.7
1,571,038 + A4249_RS07850 0.32 -1.1
1,571,251 + A4249_RS07850 0.59 +0.2
1,571,251 + A4249_RS07850 0.59 +0.5
1,571,251 + A4249_RS07850 0.59 -0.2
1,571,251 + A4249_RS07850 0.59 -1.1
1,571,252 - A4249_RS07850 0.59 -1.8
1,571,252 - A4249_RS07850 0.59 +0.2
1,571,252 - A4249_RS07850 0.59 +0.6
1,571,252 - A4249_RS07850 0.59 -1.0
1,571,334 - A4249_RS07850 0.69 +0.3
1,571,398 + A4249_RS07850 0.78 -0.5
1,571,398 + A4249_RS07850 0.78 +0.3
1,571,398 + A4249_RS07850 0.78 +0.3
1,571,398 + A4249_RS07850 0.78 -0.2
1,571,399 - A4249_RS07850 0.78 -1.3
1,571,399 - A4249_RS07850 0.78 +0.1
1,571,399 - A4249_RS07850 0.78 -0.4
1,571,444 + A4249_RS07850 0.84 -0.0
1,571,444 + A4249_RS07850 0.84 +0.0
1,571,444 + A4249_RS07850 0.84 -0.8
1,571,444 + A4249_RS07850 0.84 +1.0
1,571,445 - A4249_RS07850 0.84 -2.3
1,571,445 - A4249_RS07850 0.84 -1.1
1,571,445 - A4249_RS07850 0.84 +0.9
1,571,445 - A4249_RS07850 0.84 +1.7
1,571,445 - A4249_RS07850 0.84 -0.2
1,571,445 - A4249_RS07850 0.84 -1.2
1,571,477 + A4249_RS07850 0.88 -0.2
1,571,570 - -0.1
1,572,412 + -1.1
1,572,412 + -1.0
1,572,412 + +0.7
1,572,412 + +0.7
1,572,412 + +0.2
1,572,412 + -1.0
1,572,412 + -0.2
1,572,412 + +0.5
1,572,412 + -0.4
1,572,412 + -1.1
1,572,412 + -0.4
1,572,412 + +0.5
1,572,412 + -0.6
1,572,412 + -0.4
1,572,413 - +0.4
1,572,413 - -0.1
1,572,413 - -0.2
1,572,413 - +0.5
1,572,413 - -1.3
1,572,413 - +1.0
1,572,413 - +0.3
1,572,413 - +0.6
1,572,413 - +0.0
1,572,413 - +0.3
1,572,413 - -0.6
1,572,413 - +1.1
1,572,413 - -0.2
1,572,413 - -0.1
1,572,413 - +0.9
1,572,413 - +1.3
1,572,413 - -0.6
1,572,413 - -0.4
1,572,413 - -0.3
1,572,413 - +0.6
1,572,413 - +0.1
1,572,414 + -0.5
1,572,414 + -0.1
1,572,414 + -0.1
1,572,414 + -1.3
1,572,414 + -0.3
1,572,414 + +0.1
1,572,414 + -0.7
1,572,414 + +0.1
1,572,414 + +1.1
1,572,415 - -0.3
1,572,415 - -0.2
1,572,415 - -1.3
1,572,415 - -0.8
1,572,415 - -0.5
1,572,415 - -0.1
1,572,415 - -0.1
1,572,415 - +0.6
1,572,415 - +0.4
1,572,415 - +0.2
1,572,415 - +0.2
1,572,415 - +0.1
1,572,415 - +0.3
1,572,415 - +1.0
1,572,415 - +1.7
1,572,452 + +0.2
1,572,452 + +0.1
1,572,452 + +0.9
1,572,452 + -1.2
1,572,452 + +1.0
1,572,452 + +0.1
1,572,452 + +1.1
1,572,452 + -0.2
1,572,452 + -1.4
1,572,452 + -1.4
1,572,452 + -1.3
1,572,453 - -0.3
1,572,453 - +0.0
1,572,453 - -0.1
1,572,453 - -0.6
1,572,453 - +0.7
1,572,453 - -0.4
1,572,453 - +0.6
1,572,453 - +0.0
1,572,453 - -0.3
1,572,453 - -0.4
1,572,456 + -1.9
1,572,456 + -0.4
1,572,456 + +0.5
1,572,456 + -2.0
1,572,456 + +0.1
1,572,456 + -0.1
1,572,456 + +1.1
1,572,456 + +0.4
1,572,456 + -0.3
1,572,456 + -0.1
1,572,456 + +0.4
1,572,456 + -0.1
1,572,456 + -0.9
1,572,456 + -0.1
1,572,456 + -0.1
1,572,457 - -0.3
1,572,457 - -0.9
1,572,457 - -0.4
1,572,457 - +0.1
1,572,457 - +0.8
1,572,457 - +0.1
1,572,457 - -0.6
1,572,457 - +0.3
1,572,457 - -0.2
1,572,457 - -0.7
1,572,457 - +0.7
1,572,457 - -0.4
1,572,457 - +0.8
1,572,457 - -1.0
1,572,457 - -0.4
1,572,457 - -0.7
1,572,457 - -1.4
1,572,457 - -0.4
1,572,457 - +0.2
1,572,457 - -0.0
1,572,457 - -0.9

Or see this region's nucleotide sequence