Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02595

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02590 and A4249_RS02595 are separated by 156 nucleotidesA4249_RS02595 and A4249_RS02600 are separated by 19 nucleotidesA4249_RS02600 and A4249_RS02605 are separated by 66 nucleotides A4249_RS02590: A4249_RS02590 - helix-turn-helix transcriptional regulator, at 554,878 to 556,308 _RS02590 A4249_RS02595: A4249_RS02595 - isocitrate lyase, at 556,465 to 557,745 _RS02595 A4249_RS02600: A4249_RS02600 - hypothetical protein, at 557,765 to 557,974 _RS02600 A4249_RS02605: A4249_RS02605 - hypothetical protein, at 558,041 to 559,171 _RS02605 Position (kb) 556 557 558Strain fitness (log2 ratio) -2 -1 0 1at 555.599 kb on + strand, within A4249_RS02590at 555.599 kb on + strand, within A4249_RS02590at 555.600 kb on - strand, within A4249_RS02590at 555.671 kb on + strand, within A4249_RS02590at 555.671 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.959 kb on + strand, within A4249_RS02590at 555.960 kb on - strand, within A4249_RS02590at 555.960 kb on - strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.180 kb on + strandat 556.528 kb on + strandat 556.528 kb on + strandat 556.529 kb on - strandat 556.578 kb on + strandat 556.635 kb on + strand, within A4249_RS02595at 556.636 kb on - strand, within A4249_RS02595at 556.636 kb on - strand, within A4249_RS02595at 556.671 kb on + strand, within A4249_RS02595at 556.672 kb on - strand, within A4249_RS02595at 556.672 kb on - strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.740 kb on + strand, within A4249_RS02595at 556.741 kb on - strand, within A4249_RS02595at 556.741 kb on - strand, within A4249_RS02595at 556.774 kb on + strand, within A4249_RS02595at 557.241 kb on - strand, within A4249_RS02595at 557.269 kb on + strand, within A4249_RS02595at 557.269 kb on + strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.277 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.380 kb on + strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.381 kb on - strand, within A4249_RS02595at 557.382 kb on + strand, within A4249_RS02595at 557.382 kb on + strand, within A4249_RS02595at 557.382 kb on + strand, within A4249_RS02595at 557.382 kb on + strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.383 kb on - strand, within A4249_RS02595at 557.467 kb on + strand, within A4249_RS02595at 557.467 kb on + strand, within A4249_RS02595at 557.523 kb on - strand, within A4249_RS02595at 557.563 kb on + strand, within A4249_RS02595at 557.564 kb on - strand, within A4249_RS02595at 557.608 kb on + strand, within A4249_RS02595at 557.609 kb on - strand, within A4249_RS02595at 557.648 kb on - strandat 557.743 kb on + strandat 557.743 kb on + strandat 557.885 kb on + strand, within A4249_RS02600at 557.885 kb on + strand, within A4249_RS02600at 557.885 kb on + strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.886 kb on - strand, within A4249_RS02600at 557.966 kb on + strandat 557.967 kb on - strandat 557.972 kb on + strandat 557.973 kb on - strandat 557.973 kb on - strandat 558.127 kb on + strandat 558.127 kb on + strandat 558.127 kb on + strandat 558.127 kb on + strandat 558.127 kb on + strandat 558.128 kb on - strandat 558.128 kb on - strandat 558.128 kb on - strandat 558.128 kb on - strandat 558.258 kb on + strand, within A4249_RS02605at 558.258 kb on + strand, within A4249_RS02605at 558.259 kb on - strand, within A4249_RS02605at 558.259 kb on - strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.307 kb on + strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.308 kb on - strand, within A4249_RS02605at 558.353 kb on - strand, within A4249_RS02605at 558.432 kb on + strand, within A4249_RS02605at 558.432 kb on + strand, within A4249_RS02605at 558.432 kb on + strand, within A4249_RS02605at 558.432 kb on + strand, within A4249_RS02605at 558.433 kb on - strand, within A4249_RS02605at 558.433 kb on - strand, within A4249_RS02605at 558.433 kb on - strand, within A4249_RS02605at 558.433 kb on - strand, within A4249_RS02605at 558.433 kb on - strand, within A4249_RS02605at 558.630 kb on + strand, within A4249_RS02605at 558.630 kb on + strand, within A4249_RS02605at 558.631 kb on - strand, within A4249_RS02605at 558.631 kb on - strand, within A4249_RS02605at 558.631 kb on - strand, within A4249_RS02605at 558.631 kb on - strand, within A4249_RS02605at 558.741 kb on + strand, within A4249_RS02605at 558.741 kb on + strand, within A4249_RS02605at 558.742 kb on - strand, within A4249_RS02605

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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555,599 + A4249_RS02590 0.50 -0.8
555,599 + A4249_RS02590 0.50 -0.1
555,600 - A4249_RS02590 0.50 +0.2
555,671 + A4249_RS02590 0.55 +0.6
555,671 + A4249_RS02590 0.55 +0.5
555,863 + A4249_RS02590 0.69 +0.9
555,863 + A4249_RS02590 0.69 -0.1
555,863 + A4249_RS02590 0.69 +0.2
555,863 + A4249_RS02590 0.69 +0.1
555,863 + A4249_RS02590 0.69 +0.1
555,863 + A4249_RS02590 0.69 +0.2
555,863 + A4249_RS02590 0.69 +0.2
555,864 - A4249_RS02590 0.69 -0.4
555,864 - A4249_RS02590 0.69 +0.5
555,864 - A4249_RS02590 0.69 +0.2
555,864 - A4249_RS02590 0.69 -0.1
555,864 - A4249_RS02590 0.69 +0.6
555,864 - A4249_RS02590 0.69 +0.6
555,959 + A4249_RS02590 0.76 -0.4
555,960 - A4249_RS02590 0.76 +0.1
555,960 - A4249_RS02590 0.76 +0.1
556,124 + A4249_RS02590 0.87 +0.4
556,124 + A4249_RS02590 0.87 +0.5
556,124 + A4249_RS02590 0.87 -0.4
556,124 + A4249_RS02590 0.87 -1.7
556,124 + A4249_RS02590 0.87 -0.1
556,124 + A4249_RS02590 0.87 +0.2
556,124 + A4249_RS02590 0.87 -0.4
556,124 + A4249_RS02590 0.87 +0.2
556,124 + A4249_RS02590 0.87 +0.5
556,124 + A4249_RS02590 0.87 -0.9
556,125 - A4249_RS02590 0.87 +0.1
556,125 - A4249_RS02590 0.87 -1.2
556,125 - A4249_RS02590 0.87 +1.6
556,125 - A4249_RS02590 0.87 +0.9
556,125 - A4249_RS02590 0.87 +1.5
556,125 - A4249_RS02590 0.87 +0.5
556,125 - A4249_RS02590 0.87 +0.5
556,125 - A4249_RS02590 0.87 +0.1
556,125 - A4249_RS02590 0.87 -0.3
556,125 - A4249_RS02590 0.87 -0.7
556,125 - A4249_RS02590 0.87 -0.3
556,125 - A4249_RS02590 0.87 +0.1
556,125 - A4249_RS02590 0.87 +0.6
556,180 + -0.3
556,528 + -0.5
556,528 + +0.5
556,529 - +0.1
556,578 + -0.2
556,635 + A4249_RS02595 0.13 -0.1
556,636 - A4249_RS02595 0.13 -0.2
556,636 - A4249_RS02595 0.13 -0.6
556,671 + A4249_RS02595 0.16 +0.8
556,672 - A4249_RS02595 0.16 -0.2
556,672 - A4249_RS02595 0.16 +0.3
556,705 + A4249_RS02595 0.19 +0.6
556,705 + A4249_RS02595 0.19 -0.1
556,705 + A4249_RS02595 0.19 -0.1
556,705 + A4249_RS02595 0.19 +0.0
556,705 + A4249_RS02595 0.19 +0.4
556,705 + A4249_RS02595 0.19 +0.2
556,705 + A4249_RS02595 0.19 -0.4
556,705 + A4249_RS02595 0.19 +0.7
556,705 + A4249_RS02595 0.19 +0.8
556,705 + A4249_RS02595 0.19 +0.5
556,706 - A4249_RS02595 0.19 +0.1
556,706 - A4249_RS02595 0.19 +1.4
556,706 - A4249_RS02595 0.19 +1.4
556,706 - A4249_RS02595 0.19 -0.0
556,706 - A4249_RS02595 0.19 -1.0
556,706 - A4249_RS02595 0.19 -0.1
556,706 - A4249_RS02595 0.19 +0.2
556,706 - A4249_RS02595 0.19 +0.5
556,706 - A4249_RS02595 0.19 -0.7
556,706 - A4249_RS02595 0.19 -0.1
556,706 - A4249_RS02595 0.19 -1.6
556,740 + A4249_RS02595 0.21 -1.1
556,741 - A4249_RS02595 0.22 +1.0
556,741 - A4249_RS02595 0.22 +0.8
556,774 + A4249_RS02595 0.24 -0.1
557,241 - A4249_RS02595 0.61 -0.6
557,269 + A4249_RS02595 0.63 -0.1
557,269 + A4249_RS02595 0.63 -0.2
557,270 - A4249_RS02595 0.63 -0.2
557,270 - A4249_RS02595 0.63 +0.2
557,270 - A4249_RS02595 0.63 -0.0
557,270 - A4249_RS02595 0.63 +0.1
557,277 + A4249_RS02595 0.63 -0.0
557,380 + A4249_RS02595 0.71 +0.4
557,380 + A4249_RS02595 0.71 +0.4
557,380 + A4249_RS02595 0.71 -0.7
557,380 + A4249_RS02595 0.71 +0.6
557,380 + A4249_RS02595 0.71 -0.1
557,380 + A4249_RS02595 0.71 -0.2
557,380 + A4249_RS02595 0.71 -1.2
557,380 + A4249_RS02595 0.71 -0.2
557,381 - A4249_RS02595 0.72 -0.7
557,381 - A4249_RS02595 0.72 +1.2
557,381 - A4249_RS02595 0.72 -0.1
557,381 - A4249_RS02595 0.72 -0.6
557,381 - A4249_RS02595 0.72 +0.0
557,381 - A4249_RS02595 0.72 +0.4
557,381 - A4249_RS02595 0.72 +0.3
557,381 - A4249_RS02595 0.72 +0.9
557,381 - A4249_RS02595 0.72 -1.0
557,382 + A4249_RS02595 0.72 -0.1
557,382 + A4249_RS02595 0.72 +0.2
557,382 + A4249_RS02595 0.72 +0.7
557,382 + A4249_RS02595 0.72 -0.1
557,383 - A4249_RS02595 0.72 -0.0
557,383 - A4249_RS02595 0.72 -0.3
557,383 - A4249_RS02595 0.72 -1.9
557,383 - A4249_RS02595 0.72 -0.0
557,383 - A4249_RS02595 0.72 +0.9
557,383 - A4249_RS02595 0.72 +1.0
557,467 + A4249_RS02595 0.78 -0.6
557,467 + A4249_RS02595 0.78 +0.7
557,523 - A4249_RS02595 0.83 +0.6
557,563 + A4249_RS02595 0.86 -0.0
557,564 - A4249_RS02595 0.86 -0.1
557,608 + A4249_RS02595 0.89 +1.4
557,609 - A4249_RS02595 0.89 -0.3
557,648 - +0.5
557,743 + +0.4
557,743 + +0.4
557,885 + A4249_RS02600 0.57 -0.5
557,885 + A4249_RS02600 0.57 +0.3
557,885 + A4249_RS02600 0.57 -0.9
557,886 - A4249_RS02600 0.58 +0.2
557,886 - A4249_RS02600 0.58 +0.5
557,886 - A4249_RS02600 0.58 -0.1
557,886 - A4249_RS02600 0.58 +0.1
557,886 - A4249_RS02600 0.58 +0.3
557,886 - A4249_RS02600 0.58 +0.1
557,886 - A4249_RS02600 0.58 -0.3
557,886 - A4249_RS02600 0.58 -0.1
557,966 + +0.1
557,967 - +0.3
557,972 + +0.3
557,973 - +0.2
557,973 - +0.7
558,127 + -0.3
558,127 + -0.4
558,127 + +0.4
558,127 + -0.0
558,127 + -0.1
558,128 - -0.3
558,128 - -0.7
558,128 - -0.1
558,128 - +0.3
558,258 + A4249_RS02605 0.19 -0.2
558,258 + A4249_RS02605 0.19 -0.1
558,259 - A4249_RS02605 0.19 -0.3
558,259 - A4249_RS02605 0.19 -0.0
558,307 + A4249_RS02605 0.24 -0.2
558,307 + A4249_RS02605 0.24 -0.5
558,307 + A4249_RS02605 0.24 +0.1
558,307 + A4249_RS02605 0.24 -0.2
558,307 + A4249_RS02605 0.24 -0.2
558,307 + A4249_RS02605 0.24 -0.1
558,307 + A4249_RS02605 0.24 +0.2
558,307 + A4249_RS02605 0.24 +0.1
558,307 + A4249_RS02605 0.24 +0.0
558,307 + A4249_RS02605 0.24 -0.3
558,307 + A4249_RS02605 0.24 -0.1
558,307 + A4249_RS02605 0.24 +0.2
558,307 + A4249_RS02605 0.24 -0.0
558,307 + A4249_RS02605 0.24 -0.1
558,307 + A4249_RS02605 0.24 +0.4
558,308 - A4249_RS02605 0.24 -0.1
558,308 - A4249_RS02605 0.24 +0.1
558,308 - A4249_RS02605 0.24 -0.0
558,308 - A4249_RS02605 0.24 +0.4
558,308 - A4249_RS02605 0.24 -0.0
558,308 - A4249_RS02605 0.24 -0.2
558,308 - A4249_RS02605 0.24 -0.1
558,308 - A4249_RS02605 0.24 +0.1
558,308 - A4249_RS02605 0.24 -0.1
558,308 - A4249_RS02605 0.24 +0.1
558,308 - A4249_RS02605 0.24 -0.5
558,308 - A4249_RS02605 0.24 +0.0
558,308 - A4249_RS02605 0.24 +0.2
558,308 - A4249_RS02605 0.24 -0.2
558,308 - A4249_RS02605 0.24 +0.3
558,308 - A4249_RS02605 0.24 -0.0
558,308 - A4249_RS02605 0.24 +0.2
558,308 - A4249_RS02605 0.24 +0.3
558,308 - A4249_RS02605 0.24 +0.0
558,353 - A4249_RS02605 0.28 +0.5
558,432 + A4249_RS02605 0.35 +0.2
558,432 + A4249_RS02605 0.35 -0.2
558,432 + A4249_RS02605 0.35 -0.2
558,432 + A4249_RS02605 0.35 -0.0
558,433 - A4249_RS02605 0.35 -0.1
558,433 - A4249_RS02605 0.35 -0.3
558,433 - A4249_RS02605 0.35 +0.1
558,433 - A4249_RS02605 0.35 -0.2
558,433 - A4249_RS02605 0.35 -0.5
558,630 + A4249_RS02605 0.52 -0.2
558,630 + A4249_RS02605 0.52 +0.4
558,631 - A4249_RS02605 0.52 -0.8
558,631 - A4249_RS02605 0.52 +0.4
558,631 - A4249_RS02605 0.52 +0.3
558,631 - A4249_RS02605 0.52 +0.2
558,741 + A4249_RS02605 0.62 -0.6
558,741 + A4249_RS02605 0.62 -0.3
558,742 - A4249_RS02605 0.62 +0.2

Or see this region's nucleotide sequence