Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01275

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01265 and A4249_RS01270 overlap by 1 nucleotidesA4249_RS01270 and A4249_RS01275 overlap by 25 nucleotidesA4249_RS01275 and A4249_RS01280 are separated by 17 nucleotides A4249_RS01265: A4249_RS01265 - hypothetical protein, at 241,981 to 242,490 _RS01265 A4249_RS01270: A4249_RS01270 - DUF6441 family protein, at 242,490 to 243,359 _RS01270 A4249_RS01275: A4249_RS01275 - hypothetical protein, at 243,335 to 243,673 _RS01275 A4249_RS01280: A4249_RS01280 - major capsid protein, at 243,691 to 244,770 _RS01280 Position (kb) 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 242.339 kb on - strand, within A4249_RS01265at 242.782 kb on + strand, within A4249_RS01270at 242.782 kb on + strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 243.071 kb on + strand, within A4249_RS01270at 243.071 kb on + strand, within A4249_RS01270at 243.072 kb on - strand, within A4249_RS01270at 243.072 kb on - strand, within A4249_RS01270at 243.072 kb on - strand, within A4249_RS01270at 243.161 kb on + strand, within A4249_RS01270at 243.230 kb on + strand, within A4249_RS01270at 243.230 kb on + strand, within A4249_RS01270at 243.230 kb on + strand, within A4249_RS01270at 243.231 kb on - strand, within A4249_RS01270at 243.231 kb on - strand, within A4249_RS01270at 243.231 kb on - strand, within A4249_RS01270at 243.231 kb on - strand, within A4249_RS01270at 243.253 kb on + strand, within A4249_RS01270at 243.253 kb on + strand, within A4249_RS01270at 243.253 kb on + strand, within A4249_RS01270at 243.254 kb on - strand, within A4249_RS01270at 243.422 kb on + strand, within A4249_RS01275at 243.423 kb on - strand, within A4249_RS01275at 243.423 kb on - strand, within A4249_RS01275at 243.423 kb on - strand, within A4249_RS01275at 243.423 kb on - strand, within A4249_RS01275at 243.423 kb on - strand, within A4249_RS01275at 243.647 kb on + strandat 243.887 kb on + strand, within A4249_RS01280at 243.887 kb on + strand, within A4249_RS01280at 243.887 kb on + strand, within A4249_RS01280at 243.887 kb on + strand, within A4249_RS01280at 243.887 kb on + strand, within A4249_RS01280at 243.887 kb on + strand, within A4249_RS01280at 243.888 kb on - strand, within A4249_RS01280at 243.888 kb on - strand, within A4249_RS01280at 243.888 kb on - strand, within A4249_RS01280at 243.920 kb on + strand, within A4249_RS01280at 243.989 kb on + strand, within A4249_RS01280at 243.989 kb on + strand, within A4249_RS01280at 243.990 kb on - strand, within A4249_RS01280at 243.990 kb on - strand, within A4249_RS01280at 243.990 kb on - strand, within A4249_RS01280at 243.990 kb on - strand, within A4249_RS01280at 243.990 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.094 kb on + strand, within A4249_RS01280at 244.094 kb on + strand, within A4249_RS01280at 244.095 kb on - strand, within A4249_RS01280at 244.095 kb on - strand, within A4249_RS01280at 244.236 kb on + strand, within A4249_RS01280at 244.259 kb on + strand, within A4249_RS01280at 244.259 kb on + strand, within A4249_RS01280at 244.259 kb on + strand, within A4249_RS01280at 244.260 kb on - strand, within A4249_RS01280at 244.301 kb on + strand, within A4249_RS01280at 244.301 kb on + strand, within A4249_RS01280at 244.301 kb on + strand, within A4249_RS01280at 244.301 kb on + strand, within A4249_RS01280at 244.301 kb on + strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.622 kb on + strand, within A4249_RS01280at 244.622 kb on + strand, within A4249_RS01280at 244.622 kb on + strand, within A4249_RS01280at 244.623 kb on - strand, within A4249_RS01280at 244.623 kb on - strand, within A4249_RS01280at 244.623 kb on - strand, within A4249_RS01280

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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242,339 - A4249_RS01265 0.70 +0.4
242,782 + A4249_RS01270 0.34 -0.4
242,782 + A4249_RS01270 0.34 +0.4
242,969 - A4249_RS01270 0.55 -0.1
242,969 - A4249_RS01270 0.55 +0.2
242,969 - A4249_RS01270 0.55 -0.6
242,969 - A4249_RS01270 0.55 +0.2
242,969 - A4249_RS01270 0.55 +0.3
242,969 - A4249_RS01270 0.55 -0.5
242,969 - A4249_RS01270 0.55 -0.6
242,969 - A4249_RS01270 0.55 +0.0
243,071 + A4249_RS01270 0.67 +2.2
243,071 + A4249_RS01270 0.67 +0.9
243,072 - A4249_RS01270 0.67 +0.6
243,072 - A4249_RS01270 0.67 +0.3
243,072 - A4249_RS01270 0.67 -1.6
243,161 + A4249_RS01270 0.77 -0.2
243,230 + A4249_RS01270 0.85 +0.8
243,230 + A4249_RS01270 0.85 -0.5
243,230 + A4249_RS01270 0.85 -0.7
243,231 - A4249_RS01270 0.85 +0.0
243,231 - A4249_RS01270 0.85 +0.6
243,231 - A4249_RS01270 0.85 +0.0
243,231 - A4249_RS01270 0.85 +1.1
243,253 + A4249_RS01270 0.88 -0.8
243,253 + A4249_RS01270 0.88 +0.2
243,253 + A4249_RS01270 0.88 -1.7
243,254 - A4249_RS01270 0.88 -0.0
243,422 + A4249_RS01275 0.26 +0.6
243,423 - A4249_RS01275 0.26 -0.0
243,423 - A4249_RS01275 0.26 -1.3
243,423 - A4249_RS01275 0.26 -1.8
243,423 - A4249_RS01275 0.26 -1.6
243,423 - A4249_RS01275 0.26 -0.5
243,647 + +0.1
243,887 + A4249_RS01280 0.18 -0.1
243,887 + A4249_RS01280 0.18 +1.1
243,887 + A4249_RS01280 0.18 -1.1
243,887 + A4249_RS01280 0.18 +0.2
243,887 + A4249_RS01280 0.18 +0.8
243,887 + A4249_RS01280 0.18 +0.1
243,888 - A4249_RS01280 0.18 -0.8
243,888 - A4249_RS01280 0.18 +0.2
243,888 - A4249_RS01280 0.18 -0.6
243,920 + A4249_RS01280 0.21 -0.1
243,989 + A4249_RS01280 0.28 -0.1
243,989 + A4249_RS01280 0.28 -0.8
243,990 - A4249_RS01280 0.28 -0.1
243,990 - A4249_RS01280 0.28 +0.1
243,990 - A4249_RS01280 0.28 -1.2
243,990 - A4249_RS01280 0.28 +0.9
243,990 - A4249_RS01280 0.28 +0.3
244,087 - A4249_RS01280 0.37 +0.9
244,087 - A4249_RS01280 0.37 -0.2
244,087 - A4249_RS01280 0.37 +0.7
244,087 - A4249_RS01280 0.37 +0.9
244,087 - A4249_RS01280 0.37 -0.8
244,087 - A4249_RS01280 0.37 -0.1
244,094 + A4249_RS01280 0.37 +1.9
244,094 + A4249_RS01280 0.37 -0.6
244,095 - A4249_RS01280 0.37 -0.0
244,095 - A4249_RS01280 0.37 -1.8
244,236 + A4249_RS01280 0.50 +0.7
244,259 + A4249_RS01280 0.53 -0.3
244,259 + A4249_RS01280 0.53 -0.8
244,259 + A4249_RS01280 0.53 -0.5
244,260 - A4249_RS01280 0.53 -2.4
244,301 + A4249_RS01280 0.56 -0.2
244,301 + A4249_RS01280 0.56 +0.6
244,301 + A4249_RS01280 0.56 +0.8
244,301 + A4249_RS01280 0.56 +0.3
244,301 + A4249_RS01280 0.56 +0.1
244,302 - A4249_RS01280 0.57 +0.6
244,302 - A4249_RS01280 0.57 +0.8
244,302 - A4249_RS01280 0.57 -0.3
244,302 - A4249_RS01280 0.57 +0.7
244,302 - A4249_RS01280 0.57 +0.8
244,302 - A4249_RS01280 0.57 +0.4
244,302 - A4249_RS01280 0.57 +0.4
244,302 - A4249_RS01280 0.57 -0.2
244,302 - A4249_RS01280 0.57 +0.1
244,302 - A4249_RS01280 0.57 +1.4
244,589 + A4249_RS01280 0.83 -0.0
244,589 + A4249_RS01280 0.83 +0.1
244,589 + A4249_RS01280 0.83 -0.2
244,589 + A4249_RS01280 0.83 -0.3
244,589 + A4249_RS01280 0.83 -0.3
244,589 + A4249_RS01280 0.83 -0.3
244,622 + A4249_RS01280 0.86 +0.3
244,622 + A4249_RS01280 0.86 -0.4
244,622 + A4249_RS01280 0.86 -1.1
244,623 - A4249_RS01280 0.86 +0.3
244,623 - A4249_RS01280 0.86 -1.6
244,623 - A4249_RS01280 0.86 +1.1

Or see this region's nucleotide sequence