Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00855

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00845 and A4249_RS00850 are separated by 3 nucleotidesA4249_RS00850 and A4249_RS00855 are separated by 75 nucleotidesA4249_RS00855 and A4249_RS00860 are separated by 55 nucleotidesA4249_RS00860 and A4249_RS00865 are separated by 6 nucleotides A4249_RS00845: A4249_RS00845 - Tat pathway signal protein, at 159,503 to 159,748 _RS00845 A4249_RS00850: A4249_RS00850 - hypothetical protein, at 159,752 to 160,549 _RS00850 A4249_RS00855: A4249_RS00855 - hypothetical protein, at 160,625 to 161,044 _RS00855 A4249_RS00860: A4249_RS00860 - hypothetical protein, at 161,100 to 161,303 _RS00860 A4249_RS00865: A4249_RS00865 - hypothetical protein, at 161,310 to 162,161 _RS00865 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1 2at 159.754 kb on - strandat 160.280 kb on + strand, within A4249_RS00850at 160.280 kb on + strand, within A4249_RS00850at 160.280 kb on + strand, within A4249_RS00850at 160.280 kb on + strand, within A4249_RS00850at 160.335 kb on + strand, within A4249_RS00850at 160.335 kb on + strand, within A4249_RS00850at 160.335 kb on + strand, within A4249_RS00850at 160.335 kb on + strand, within A4249_RS00850at 160.336 kb on - strand, within A4249_RS00850at 160.336 kb on - strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.353 kb on + strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.354 kb on - strand, within A4249_RS00850at 160.380 kb on + strand, within A4249_RS00850at 160.381 kb on - strand, within A4249_RS00850at 160.583 kb on - strandat 160.583 kb on - strandat 160.782 kb on + strand, within A4249_RS00855at 160.782 kb on + strand, within A4249_RS00855at 160.782 kb on + strand, within A4249_RS00855at 160.783 kb on - strand, within A4249_RS00855at 160.783 kb on - strand, within A4249_RS00855at 160.783 kb on - strand, within A4249_RS00855at 161.007 kb on + strandat 161.085 kb on + strandat 161.086 kb on - strandat 161.086 kb on - strandat 161.086 kb on - strandat 161.120 kb on + strandat 161.120 kb on + strandat 161.120 kb on + strandat 161.120 kb on + strandat 161.120 kb on + strandat 161.120 kb on + strandat 161.120 kb on + strandat 161.120 kb on + strandat 161.121 kb on - strand, within A4249_RS00860at 161.121 kb on - strand, within A4249_RS00860at 161.121 kb on - strand, within A4249_RS00860at 161.121 kb on - strand, within A4249_RS00860at 161.121 kb on - strand, within A4249_RS00860at 161.311 kb on + strandat 161.312 kb on - strandat 161.312 kb on - strandat 161.312 kb on - strandat 161.312 kb on - strandat 161.312 kb on - strandat 161.391 kb on + strandat 161.443 kb on + strand, within A4249_RS00865at 161.443 kb on + strand, within A4249_RS00865at 161.443 kb on + strand, within A4249_RS00865at 161.443 kb on + strand, within A4249_RS00865at 161.444 kb on - strand, within A4249_RS00865at 161.444 kb on - strand, within A4249_RS00865at 161.444 kb on - strand, within A4249_RS00865at 161.444 kb on - strand, within A4249_RS00865at 161.444 kb on - strand, within A4249_RS00865at 161.521 kb on + strand, within A4249_RS00865at 161.521 kb on + strand, within A4249_RS00865at 161.521 kb on + strand, within A4249_RS00865at 161.522 kb on - strand, within A4249_RS00865at 161.522 kb on - strand, within A4249_RS00865at 161.522 kb on - strand, within A4249_RS00865at 161.522 kb on - strand, within A4249_RS00865at 161.594 kb on + strand, within A4249_RS00865at 161.594 kb on + strand, within A4249_RS00865at 161.594 kb on + strand, within A4249_RS00865at 161.595 kb on - strand, within A4249_RS00865at 161.595 kb on - strand, within A4249_RS00865at 161.595 kb on - strand, within A4249_RS00865at 161.694 kb on - strand, within A4249_RS00865at 161.725 kb on + strand, within A4249_RS00865at 161.725 kb on + strand, within A4249_RS00865at 161.725 kb on + strand, within A4249_RS00865at 161.725 kb on + strand, within A4249_RS00865at 161.725 kb on + strand, within A4249_RS00865at 161.725 kb on + strand, within A4249_RS00865at 161.725 kb on + strand, within A4249_RS00865at 161.726 kb on - strand, within A4249_RS00865at 161.726 kb on - strand, within A4249_RS00865at 161.762 kb on + strand, within A4249_RS00865at 161.762 kb on + strand, within A4249_RS00865at 161.844 kb on + strand, within A4249_RS00865at 161.844 kb on + strand, within A4249_RS00865at 161.845 kb on - strand, within A4249_RS00865at 161.845 kb on - strand, within A4249_RS00865at 161.863 kb on + strand, within A4249_RS00865at 161.863 kb on + strand, within A4249_RS00865at 161.863 kb on + strand, within A4249_RS00865at 161.863 kb on + strand, within A4249_RS00865at 161.863 kb on + strand, within A4249_RS00865at 161.863 kb on + strand, within A4249_RS00865at 161.864 kb on - strand, within A4249_RS00865at 161.864 kb on - strand, within A4249_RS00865at 161.864 kb on - strand, within A4249_RS00865at 161.864 kb on - strand, within A4249_RS00865at 161.953 kb on + strand, within A4249_RS00865at 161.953 kb on + strand, within A4249_RS00865at 161.953 kb on + strand, within A4249_RS00865at 161.954 kb on - strand, within A4249_RS00865at 161.960 kb on + strand, within A4249_RS00865at 161.960 kb on + strand, within A4249_RS00865at 161.960 kb on + strand, within A4249_RS00865at 161.960 kb on + strand, within A4249_RS00865at 161.961 kb on - strand, within A4249_RS00865

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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159,754 - +0.6
160,280 + A4249_RS00850 0.66 -0.1
160,280 + A4249_RS00850 0.66 -0.0
160,280 + A4249_RS00850 0.66 +0.2
160,280 + A4249_RS00850 0.66 -0.3
160,335 + A4249_RS00850 0.73 -0.6
160,335 + A4249_RS00850 0.73 +0.2
160,335 + A4249_RS00850 0.73 +0.0
160,335 + A4249_RS00850 0.73 -0.4
160,336 - A4249_RS00850 0.73 +0.6
160,336 - A4249_RS00850 0.73 -0.2
160,353 + A4249_RS00850 0.75 +0.7
160,353 + A4249_RS00850 0.75 +0.2
160,353 + A4249_RS00850 0.75 +0.3
160,353 + A4249_RS00850 0.75 +0.3
160,353 + A4249_RS00850 0.75 +0.8
160,353 + A4249_RS00850 0.75 -0.1
160,353 + A4249_RS00850 0.75 +0.0
160,353 + A4249_RS00850 0.75 -0.8
160,353 + A4249_RS00850 0.75 -0.3
160,353 + A4249_RS00850 0.75 -0.1
160,353 + A4249_RS00850 0.75 -0.5
160,354 - A4249_RS00850 0.75 -0.2
160,354 - A4249_RS00850 0.75 -0.3
160,354 - A4249_RS00850 0.75 -1.6
160,354 - A4249_RS00850 0.75 -0.2
160,354 - A4249_RS00850 0.75 +0.7
160,354 - A4249_RS00850 0.75 +0.0
160,354 - A4249_RS00850 0.75 -0.3
160,354 - A4249_RS00850 0.75 -0.3
160,354 - A4249_RS00850 0.75 +0.1
160,354 - A4249_RS00850 0.75 -0.2
160,354 - A4249_RS00850 0.75 -1.0
160,354 - A4249_RS00850 0.75 -0.4
160,354 - A4249_RS00850 0.75 -0.2
160,354 - A4249_RS00850 0.75 +0.8
160,354 - A4249_RS00850 0.75 -0.0
160,380 + A4249_RS00850 0.79 +0.8
160,381 - A4249_RS00850 0.79 +0.4
160,583 - -0.1
160,583 - -0.6
160,782 + A4249_RS00855 0.37 -0.5
160,782 + A4249_RS00855 0.37 -0.1
160,782 + A4249_RS00855 0.37 -0.5
160,783 - A4249_RS00855 0.38 +0.1
160,783 - A4249_RS00855 0.38 -0.5
160,783 - A4249_RS00855 0.38 -1.4
161,007 + -0.6
161,085 + -2.3
161,086 - +1.2
161,086 - -1.1
161,086 - -0.9
161,120 + +0.4
161,120 + +1.4
161,120 + +1.4
161,120 + -0.3
161,120 + +0.2
161,120 + +0.7
161,120 + -1.4
161,120 + +0.6
161,121 - A4249_RS00860 0.10 +0.2
161,121 - A4249_RS00860 0.10 +1.0
161,121 - A4249_RS00860 0.10 +0.3
161,121 - A4249_RS00860 0.10 -0.1
161,121 - A4249_RS00860 0.10 +0.2
161,311 + +0.2
161,312 - +0.1
161,312 - +0.9
161,312 - -0.2
161,312 - -0.3
161,312 - +0.7
161,391 + +0.2
161,443 + A4249_RS00865 0.16 -0.6
161,443 + A4249_RS00865 0.16 +0.1
161,443 + A4249_RS00865 0.16 +0.5
161,443 + A4249_RS00865 0.16 +0.1
161,444 - A4249_RS00865 0.16 -0.6
161,444 - A4249_RS00865 0.16 +1.0
161,444 - A4249_RS00865 0.16 -0.6
161,444 - A4249_RS00865 0.16 +0.1
161,444 - A4249_RS00865 0.16 -0.3
161,521 + A4249_RS00865 0.25 -0.1
161,521 + A4249_RS00865 0.25 +0.5
161,521 + A4249_RS00865 0.25 -0.7
161,522 - A4249_RS00865 0.25 +0.3
161,522 - A4249_RS00865 0.25 -0.1
161,522 - A4249_RS00865 0.25 +0.1
161,522 - A4249_RS00865 0.25 -0.3
161,594 + A4249_RS00865 0.33 -0.9
161,594 + A4249_RS00865 0.33 -0.1
161,594 + A4249_RS00865 0.33 -1.9
161,595 - A4249_RS00865 0.33 -0.8
161,595 - A4249_RS00865 0.33 -0.1
161,595 - A4249_RS00865 0.33 -0.7
161,694 - A4249_RS00865 0.45 +0.3
161,725 + A4249_RS00865 0.49 +1.8
161,725 + A4249_RS00865 0.49 -1.2
161,725 + A4249_RS00865 0.49 +0.2
161,725 + A4249_RS00865 0.49 -1.1
161,725 + A4249_RS00865 0.49 -0.2
161,725 + A4249_RS00865 0.49 +0.9
161,725 + A4249_RS00865 0.49 -0.3
161,726 - A4249_RS00865 0.49 +0.6
161,726 - A4249_RS00865 0.49 +0.2
161,762 + A4249_RS00865 0.53 -0.5
161,762 + A4249_RS00865 0.53 -0.4
161,844 + A4249_RS00865 0.63 +0.2
161,844 + A4249_RS00865 0.63 -2.3
161,845 - A4249_RS00865 0.63 -2.1
161,845 - A4249_RS00865 0.63 +2.2
161,863 + A4249_RS00865 0.65 -0.1
161,863 + A4249_RS00865 0.65 +0.3
161,863 + A4249_RS00865 0.65 +0.0
161,863 + A4249_RS00865 0.65 -0.0
161,863 + A4249_RS00865 0.65 -0.4
161,863 + A4249_RS00865 0.65 +0.2
161,864 - A4249_RS00865 0.65 +0.2
161,864 - A4249_RS00865 0.65 -0.3
161,864 - A4249_RS00865 0.65 +0.1
161,864 - A4249_RS00865 0.65 -0.2
161,953 + A4249_RS00865 0.75 -1.4
161,953 + A4249_RS00865 0.75 -1.6
161,953 + A4249_RS00865 0.75 +0.7
161,954 - A4249_RS00865 0.76 +0.4
161,960 + A4249_RS00865 0.76 -1.7
161,960 + A4249_RS00865 0.76 +0.2
161,960 + A4249_RS00865 0.76 -0.1
161,960 + A4249_RS00865 0.76 +0.1
161,961 - A4249_RS00865 0.76 -0.8

Or see this region's nucleotide sequence