Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00700

Experiment: Guanine 0.6617 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS00690 and A4249_RS00695 are separated by 5 nucleotidesA4249_RS00695 and A4249_RS00700 are separated by 147 nucleotidesA4249_RS00700 and A4249_RS00705 are separated by 54 nucleotidesA4249_RS00705 and A4249_RS00710 are separated by 70 nucleotides A4249_RS00690: A4249_RS00690 - mitochondrial fission ELM1 family protein, at 127,700 to 128,680 _RS00690 A4249_RS00695: A4249_RS00695 - transcription elongation factor GreA, at 128,686 to 129,159 _RS00695 A4249_RS00700: A4249_RS00700 - hypothetical protein, at 129,307 to 129,507 _RS00700 A4249_RS00705: A4249_RS00705 - glutathione S-transferase, at 129,562 to 130,227 _RS00705 A4249_RS00710: A4249_RS00710 - hypothetical protein, at 130,298 to 130,498 _RS00710 Position (kb) 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1at 128.685 kb on - strandat 128.687 kb on + strandat 128.687 kb on + strandat 128.687 kb on + strandat 128.687 kb on + strandat 128.687 kb on + strandat 128.687 kb on + strandat 128.687 kb on + strandat 128.688 kb on - strandat 128.688 kb on - strandat 128.688 kb on - strandat 128.688 kb on - strandat 129.208 kb on + strandat 129.209 kb on - strandat 129.209 kb on - strandat 129.358 kb on + strand, within A4249_RS00700at 129.358 kb on + strand, within A4249_RS00700at 129.359 kb on - strand, within A4249_RS00700at 129.359 kb on - strand, within A4249_RS00700at 129.369 kb on - strand, within A4249_RS00700at 129.369 kb on - strand, within A4249_RS00700at 129.516 kb on - strandat 129.569 kb on + strandat 129.569 kb on + strandat 129.569 kb on + strandat 129.569 kb on + strandat 129.569 kb on + strandat 129.569 kb on + strandat 129.569 kb on + strandat 129.569 kb on + strandat 129.569 kb on + strandat 129.570 kb on - strandat 129.570 kb on - strandat 129.570 kb on - strandat 129.570 kb on - strandat 129.570 kb on - strandat 129.575 kb on + strandat 129.606 kb on - strandat 129.890 kb on - strand, within A4249_RS00705at 129.890 kb on - strand, within A4249_RS00705at 129.890 kb on - strand, within A4249_RS00705at 129.929 kb on + strand, within A4249_RS00705at 129.929 kb on + strand, within A4249_RS00705at 129.929 kb on + strand, within A4249_RS00705at 129.929 kb on + strand, within A4249_RS00705at 129.929 kb on + strand, within A4249_RS00705at 129.930 kb on - strand, within A4249_RS00705at 129.930 kb on - strand, within A4249_RS00705at 129.930 kb on - strand, within A4249_RS00705at 129.930 kb on - strand, within A4249_RS00705at 129.930 kb on - strand, within A4249_RS00705at 129.930 kb on - strand, within A4249_RS00705at 129.941 kb on + strand, within A4249_RS00705at 129.941 kb on + strand, within A4249_RS00705at 129.941 kb on + strand, within A4249_RS00705at 129.942 kb on - strand, within A4249_RS00705at 129.942 kb on - strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.998 kb on + strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 129.999 kb on - strand, within A4249_RS00705at 130.002 kb on + strand, within A4249_RS00705at 130.002 kb on + strand, within A4249_RS00705at 130.002 kb on + strand, within A4249_RS00705at 130.003 kb on - strand, within A4249_RS00705at 130.013 kb on + strand, within A4249_RS00705at 130.013 kb on + strand, within A4249_RS00705at 130.014 kb on - strand, within A4249_RS00705at 130.014 kb on - strand, within A4249_RS00705at 130.014 kb on - strand, within A4249_RS00705at 130.014 kb on - strand, within A4249_RS00705at 130.014 kb on - strand, within A4249_RS00705at 130.136 kb on + strand, within A4249_RS00705at 130.151 kb on + strand, within A4249_RS00705at 130.151 kb on + strand, within A4249_RS00705at 130.152 kb on - strand, within A4249_RS00705at 130.152 kb on - strand, within A4249_RS00705at 130.152 kb on - strand, within A4249_RS00705at 130.152 kb on - strand, within A4249_RS00705at 130.152 kb on - strand, within A4249_RS00705at 130.152 kb on - strand, within A4249_RS00705at 130.256 kb on + strandat 130.256 kb on + strandat 130.257 kb on - strandat 130.386 kb on + strand, within A4249_RS00710at 130.386 kb on + strand, within A4249_RS00710at 130.386 kb on + strand, within A4249_RS00710at 130.386 kb on + strand, within A4249_RS00710at 130.386 kb on + strand, within A4249_RS00710at 130.386 kb on + strand, within A4249_RS00710at 130.387 kb on - strand, within A4249_RS00710at 130.387 kb on - strand, within A4249_RS00710at 130.387 kb on - strand, within A4249_RS00710at 130.387 kb on - strand, within A4249_RS00710at 130.387 kb on - strand, within A4249_RS00710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
remove
128,685 - -0.3
128,687 + +0.3
128,687 + +0.1
128,687 + +0.5
128,687 + -0.3
128,687 + -0.8
128,687 + -0.4
128,687 + -0.6
128,688 - -1.4
128,688 - -0.9
128,688 - +0.6
128,688 - -2.9
129,208 + +0.5
129,209 - +0.0
129,209 - -1.0
129,358 + A4249_RS00700 0.25 +0.0
129,358 + A4249_RS00700 0.25 -0.2
129,359 - A4249_RS00700 0.26 +1.4
129,359 - A4249_RS00700 0.26 -0.2
129,369 - A4249_RS00700 0.31 +0.1
129,369 - A4249_RS00700 0.31 -0.5
129,516 - -0.2
129,569 + -0.7
129,569 + -0.8
129,569 + +0.4
129,569 + +0.9
129,569 + -0.6
129,569 + +0.5
129,569 + +0.3
129,569 + -0.5
129,569 + -0.1
129,570 - -0.7
129,570 - -0.6
129,570 - -0.7
129,570 - +0.3
129,570 - +0.8
129,575 + +0.6
129,606 - -0.3
129,890 - A4249_RS00705 0.49 +0.2
129,890 - A4249_RS00705 0.49 +0.0
129,890 - A4249_RS00705 0.49 -0.2
129,929 + A4249_RS00705 0.55 +0.2
129,929 + A4249_RS00705 0.55 -2.7
129,929 + A4249_RS00705 0.55 -0.1
129,929 + A4249_RS00705 0.55 -1.6
129,929 + A4249_RS00705 0.55 +0.6
129,930 - A4249_RS00705 0.55 +0.6
129,930 - A4249_RS00705 0.55 +0.0
129,930 - A4249_RS00705 0.55 +0.5
129,930 - A4249_RS00705 0.55 -0.4
129,930 - A4249_RS00705 0.55 -0.5
129,930 - A4249_RS00705 0.55 -0.7
129,941 + A4249_RS00705 0.57 +0.1
129,941 + A4249_RS00705 0.57 +1.7
129,941 + A4249_RS00705 0.57 +0.1
129,942 - A4249_RS00705 0.57 -0.8
129,942 - A4249_RS00705 0.57 -0.5
129,998 + A4249_RS00705 0.65 -0.2
129,998 + A4249_RS00705 0.65 -0.4
129,998 + A4249_RS00705 0.65 +1.4
129,998 + A4249_RS00705 0.65 -0.2
129,998 + A4249_RS00705 0.65 +0.6
129,998 + A4249_RS00705 0.65 +0.2
129,998 + A4249_RS00705 0.65 -0.8
129,998 + A4249_RS00705 0.65 -0.0
129,998 + A4249_RS00705 0.65 -0.3
129,998 + A4249_RS00705 0.65 +0.0
129,998 + A4249_RS00705 0.65 -0.2
129,998 + A4249_RS00705 0.65 +0.1
129,998 + A4249_RS00705 0.65 -0.2
129,998 + A4249_RS00705 0.65 -0.1
129,998 + A4249_RS00705 0.65 -0.1
129,998 + A4249_RS00705 0.65 +0.6
129,998 + A4249_RS00705 0.65 -0.3
129,999 - A4249_RS00705 0.66 -0.4
129,999 - A4249_RS00705 0.66 +0.3
129,999 - A4249_RS00705 0.66 -0.8
129,999 - A4249_RS00705 0.66 +0.9
129,999 - A4249_RS00705 0.66 +0.6
129,999 - A4249_RS00705 0.66 -0.7
129,999 - A4249_RS00705 0.66 +0.1
129,999 - A4249_RS00705 0.66 +1.2
129,999 - A4249_RS00705 0.66 +0.5
129,999 - A4249_RS00705 0.66 -0.4
129,999 - A4249_RS00705 0.66 +0.0
129,999 - A4249_RS00705 0.66 -0.4
129,999 - A4249_RS00705 0.66 +0.5
129,999 - A4249_RS00705 0.66 -0.3
129,999 - A4249_RS00705 0.66 +1.4
130,002 + A4249_RS00705 0.66 +0.5
130,002 + A4249_RS00705 0.66 -0.9
130,002 + A4249_RS00705 0.66 -0.8
130,003 - A4249_RS00705 0.66 +0.6
130,013 + A4249_RS00705 0.68 +0.7
130,013 + A4249_RS00705 0.68 -0.2
130,014 - A4249_RS00705 0.68 -0.0
130,014 - A4249_RS00705 0.68 -1.9
130,014 - A4249_RS00705 0.68 -0.9
130,014 - A4249_RS00705 0.68 +0.7
130,014 - A4249_RS00705 0.68 +1.2
130,136 + A4249_RS00705 0.86 -0.1
130,151 + A4249_RS00705 0.88 +0.2
130,151 + A4249_RS00705 0.88 -0.9
130,152 - A4249_RS00705 0.89 -0.3
130,152 - A4249_RS00705 0.89 +0.0
130,152 - A4249_RS00705 0.89 +1.0
130,152 - A4249_RS00705 0.89 +0.3
130,152 - A4249_RS00705 0.89 +0.3
130,152 - A4249_RS00705 0.89 +0.6
130,256 + -0.4
130,256 + +1.0
130,257 - +1.6
130,386 + A4249_RS00710 0.44 +0.6
130,386 + A4249_RS00710 0.44 -0.1
130,386 + A4249_RS00710 0.44 -0.6
130,386 + A4249_RS00710 0.44 -0.3
130,386 + A4249_RS00710 0.44 -1.8
130,386 + A4249_RS00710 0.44 -1.7
130,387 - A4249_RS00710 0.44 -1.3
130,387 - A4249_RS00710 0.44 +0.2
130,387 - A4249_RS00710 0.44 -0.1
130,387 - A4249_RS00710 0.44 +1.0
130,387 - A4249_RS00710 0.44 -0.2

Or see this region's nucleotide sequence