Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_05935

Experiment: RCM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_05925 and HUW76_05930 are separated by 10 nucleotidesHUW76_05930 and HUW76_05935 overlap by 4 nucleotidesHUW76_05935 and HUW76_05940 are separated by 106 nucleotidesHUW76_05940 and HUW76_05945 are separated by 18 nucleotides HUW76_05925: HUW76_05925 - Cof-type HAD-IIB family hydrolase, at 1,210,285 to 1,211,079 _05925 HUW76_05930: HUW76_05930 - sulfurtransferase, at 1,211,090 to 1,211,953 _05930 HUW76_05935: HUW76_05935 - 3-dehydroquinate synthase, at 1,211,950 to 1,213,944 _05935 HUW76_05940: HUW76_05940 - DUF4846 domain-containing protein, at 1,214,051 to 1,214,872 _05940 HUW76_05945: HUW76_05945 - signal peptide peptidase SppA, at 1,214,891 to 1,216,546 _05945 Position (kb) 1211 1212 1213 1214Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 1210.951 kb on + strand, within HUW76_05925at 1210.979 kb on + strand, within HUW76_05925at 1210.979 kb on - strand, within HUW76_05925at 1211.038 kb on + strandat 1211.123 kb on - strandat 1211.123 kb on - strandat 1211.194 kb on - strand, within HUW76_05930at 1211.230 kb on + strand, within HUW76_05930at 1211.235 kb on + strand, within HUW76_05930at 1211.241 kb on - strand, within HUW76_05930at 1211.448 kb on + strand, within HUW76_05930at 1211.448 kb on + strand, within HUW76_05930at 1211.456 kb on - strand, within HUW76_05930at 1211.456 kb on - strand, within HUW76_05930at 1211.456 kb on - strand, within HUW76_05930at 1211.456 kb on - strand, within HUW76_05930at 1211.458 kb on - strand, within HUW76_05930at 1211.458 kb on - strand, within HUW76_05930at 1211.619 kb on + strand, within HUW76_05930at 1211.619 kb on + strand, within HUW76_05930at 1211.661 kb on - strand, within HUW76_05930at 1211.661 kb on - strand, within HUW76_05930at 1211.696 kb on - strand, within HUW76_05930at 1211.696 kb on - strand, within HUW76_05930at 1211.696 kb on - strand, within HUW76_05930at 1211.696 kb on - strand, within HUW76_05930at 1211.696 kb on - strand, within HUW76_05930at 1211.696 kb on - strand, within HUW76_05930at 1211.761 kb on + strand, within HUW76_05930at 1211.761 kb on + strand, within HUW76_05930at 1211.769 kb on - strand, within HUW76_05930at 1211.769 kb on - strand, within HUW76_05930at 1211.828 kb on + strand, within HUW76_05930at 1211.828 kb on + strand, within HUW76_05930at 1211.836 kb on - strand, within HUW76_05930at 1212.048 kb on + strandat 1212.062 kb on - strandat 1212.087 kb on + strandat 1212.087 kb on + strandat 1212.087 kb on + strandat 1212.087 kb on + strandat 1212.088 kb on + strandat 1212.088 kb on + strandat 1212.095 kb on - strandat 1212.095 kb on - strandat 1212.095 kb on - strandat 1212.095 kb on - strandat 1212.095 kb on - strandat 1212.095 kb on - strandat 1212.175 kb on - strand, within HUW76_05935at 1212.188 kb on + strand, within HUW76_05935at 1212.188 kb on + strand, within HUW76_05935at 1212.190 kb on + strand, within HUW76_05935at 1212.190 kb on + strand, within HUW76_05935at 1212.198 kb on - strand, within HUW76_05935at 1212.198 kb on - strand, within HUW76_05935at 1212.198 kb on - strand, within HUW76_05935at 1212.198 kb on - strand, within HUW76_05935at 1212.198 kb on - strand, within HUW76_05935at 1212.210 kb on - strand, within HUW76_05935at 1212.228 kb on - strand, within HUW76_05935at 1212.248 kb on - strand, within HUW76_05935at 1212.248 kb on - strand, within HUW76_05935at 1212.279 kb on + strand, within HUW76_05935at 1212.279 kb on + strand, within HUW76_05935at 1212.287 kb on - strand, within HUW76_05935at 1212.287 kb on - strand, within HUW76_05935at 1212.287 kb on - strand, within HUW76_05935at 1212.320 kb on - strand, within HUW76_05935at 1212.379 kb on + strand, within HUW76_05935at 1212.379 kb on + strand, within HUW76_05935at 1212.434 kb on - strand, within HUW76_05935at 1212.438 kb on + strand, within HUW76_05935at 1212.447 kb on + strand, within HUW76_05935at 1212.447 kb on - strand, within HUW76_05935at 1212.462 kb on - strand, within HUW76_05935at 1212.462 kb on - strand, within HUW76_05935at 1212.516 kb on - strand, within HUW76_05935at 1212.516 kb on - strand, within HUW76_05935at 1212.535 kb on + strand, within HUW76_05935at 1212.535 kb on + strand, within HUW76_05935at 1212.543 kb on + strand, within HUW76_05935at 1212.543 kb on + strand, within HUW76_05935at 1212.543 kb on - strand, within HUW76_05935at 1212.543 kb on - strand, within HUW76_05935at 1212.548 kb on - strand, within HUW76_05935at 1212.551 kb on - strand, within HUW76_05935at 1212.605 kb on + strand, within HUW76_05935at 1212.605 kb on + strand, within HUW76_05935at 1212.613 kb on - strand, within HUW76_05935at 1212.678 kb on - strand, within HUW76_05935at 1212.678 kb on - strand, within HUW76_05935at 1212.857 kb on - strand, within HUW76_05935at 1212.857 kb on - strand, within HUW76_05935at 1212.866 kb on - strand, within HUW76_05935at 1212.866 kb on - strand, within HUW76_05935at 1212.978 kb on - strand, within HUW76_05935at 1213.067 kb on + strand, within HUW76_05935at 1213.067 kb on + strand, within HUW76_05935at 1213.160 kb on + strand, within HUW76_05935at 1213.160 kb on + strand, within HUW76_05935at 1213.162 kb on + strand, within HUW76_05935at 1213.162 kb on + strand, within HUW76_05935at 1213.180 kb on - strand, within HUW76_05935at 1213.184 kb on + strand, within HUW76_05935at 1213.188 kb on + strand, within HUW76_05935at 1213.188 kb on + strand, within HUW76_05935at 1213.190 kb on + strand, within HUW76_05935at 1213.190 kb on + strand, within HUW76_05935at 1213.191 kb on - strand, within HUW76_05935at 1213.191 kb on - strand, within HUW76_05935at 1213.228 kb on + strand, within HUW76_05935at 1213.229 kb on - strand, within HUW76_05935at 1213.229 kb on - strand, within HUW76_05935at 1213.231 kb on - strand, within HUW76_05935at 1213.231 kb on - strand, within HUW76_05935at 1213.272 kb on + strand, within HUW76_05935at 1213.272 kb on + strand, within HUW76_05935at 1213.272 kb on + strand, within HUW76_05935at 1213.272 kb on + strand, within HUW76_05935at 1213.273 kb on + strand, within HUW76_05935at 1213.273 kb on + strand, within HUW76_05935at 1213.273 kb on + strand, within HUW76_05935at 1213.280 kb on - strand, within HUW76_05935at 1213.385 kb on - strand, within HUW76_05935at 1213.456 kb on - strand, within HUW76_05935at 1213.456 kb on - strand, within HUW76_05935at 1213.490 kb on - strand, within HUW76_05935at 1213.540 kb on - strand, within HUW76_05935at 1213.540 kb on - strand, within HUW76_05935at 1213.556 kb on - strand, within HUW76_05935at 1213.584 kb on + strand, within HUW76_05935at 1213.613 kb on - strand, within HUW76_05935at 1213.616 kb on + strand, within HUW76_05935at 1213.618 kb on + strand, within HUW76_05935at 1213.626 kb on - strand, within HUW76_05935at 1213.626 kb on - strand, within HUW76_05935at 1213.633 kb on + strand, within HUW76_05935at 1213.633 kb on + strand, within HUW76_05935at 1213.659 kb on + strand, within HUW76_05935at 1213.659 kb on + strand, within HUW76_05935at 1213.659 kb on - strand, within HUW76_05935at 1213.665 kb on + strand, within HUW76_05935at 1213.665 kb on + strand, within HUW76_05935at 1213.735 kb on - strand, within HUW76_05935at 1213.750 kb on + strandat 1213.750 kb on + strandat 1213.835 kb on + strandat 1213.835 kb on + strandat 1213.924 kb on - strandat 1213.924 kb on - strandat 1214.022 kb on + strandat 1214.037 kb on - strandat 1214.037 kb on - strandat 1214.091 kb on + strandat 1214.138 kb on - strand, within HUW76_05940at 1214.139 kb on - strand, within HUW76_05940at 1214.181 kb on - strand, within HUW76_05940at 1214.189 kb on - strand, within HUW76_05940at 1214.190 kb on - strand, within HUW76_05940at 1214.254 kb on - strand, within HUW76_05940at 1214.264 kb on + strand, within HUW76_05940at 1214.264 kb on + strand, within HUW76_05940at 1214.351 kb on - strand, within HUW76_05940at 1214.394 kb on - strand, within HUW76_05940at 1214.404 kb on - strand, within HUW76_05940at 1214.404 kb on - strand, within HUW76_05940at 1214.455 kb on + strand, within HUW76_05940at 1214.463 kb on - strand, within HUW76_05940at 1214.463 kb on - strand, within HUW76_05940at 1214.554 kb on + strand, within HUW76_05940at 1214.562 kb on - strand, within HUW76_05940at 1214.562 kb on - strand, within HUW76_05940at 1214.562 kb on - strand, within HUW76_05940at 1214.563 kb on + strand, within HUW76_05940at 1214.605 kb on + strand, within HUW76_05940at 1214.605 kb on + strand, within HUW76_05940at 1214.605 kb on + strand, within HUW76_05940at 1214.613 kb on - strand, within HUW76_05940at 1214.613 kb on - strand, within HUW76_05940at 1214.613 kb on - strand, within HUW76_05940at 1214.613 kb on - strand, within HUW76_05940at 1214.613 kb on - strand, within HUW76_05940at 1214.613 kb on - strand, within HUW76_05940at 1214.623 kb on - strand, within HUW76_05940at 1214.741 kb on - strand, within HUW76_05940at 1214.760 kb on - strand, within HUW76_05940at 1214.760 kb on - strand, within HUW76_05940at 1214.795 kb on + strandat 1214.807 kb on - strandat 1214.867 kb on - strandat 1214.867 kb on - strandat 1214.875 kb on - strandat 1214.940 kb on + strandat 1214.940 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM (C)
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1,210,951 + HUW76_05925 0.84 +1.7
1,210,979 + HUW76_05925 0.87 +0.8
1,210,979 - HUW76_05925 0.87 -0.5
1,211,038 + +1.3
1,211,123 - -1.1
1,211,123 - +0.3
1,211,194 - HUW76_05930 0.12 -1.9
1,211,230 + HUW76_05930 0.16 +3.7
1,211,235 + HUW76_05930 0.17 -1.2
1,211,241 - HUW76_05930 0.17 -1.5
1,211,448 + HUW76_05930 0.41 +0.7
1,211,448 + HUW76_05930 0.41 +2.0
1,211,456 - HUW76_05930 0.42 +0.9
1,211,456 - HUW76_05930 0.42 -0.7
1,211,456 - HUW76_05930 0.42 +0.1
1,211,456 - HUW76_05930 0.42 -1.0
1,211,458 - HUW76_05930 0.43 -0.8
1,211,458 - HUW76_05930 0.43 -2.4
1,211,619 + HUW76_05930 0.61 +3.4
1,211,619 + HUW76_05930 0.61 +6.1
1,211,661 - HUW76_05930 0.66 -2.1
1,211,661 - HUW76_05930 0.66 +0.9
1,211,696 - HUW76_05930 0.70 -2.4
1,211,696 - HUW76_05930 0.70 -1.7
1,211,696 - HUW76_05930 0.70 +0.0
1,211,696 - HUW76_05930 0.70 +0.7
1,211,696 - HUW76_05930 0.70 -1.2
1,211,696 - HUW76_05930 0.70 -2.4
1,211,761 + HUW76_05930 0.78 +0.8
1,211,761 + HUW76_05930 0.78 -2.4
1,211,769 - HUW76_05930 0.79 -0.5
1,211,769 - HUW76_05930 0.79 -1.5
1,211,828 + HUW76_05930 0.85 +2.3
1,211,828 + HUW76_05930 0.85 +2.6
1,211,836 - HUW76_05930 0.86 -1.2
1,212,048 + +2.4
1,212,062 - +0.2
1,212,087 + +2.7
1,212,087 + +0.5
1,212,087 + +3.4
1,212,087 + +1.3
1,212,088 + +2.5
1,212,088 + +3.1
1,212,095 - -1.4
1,212,095 - -6.1
1,212,095 - -3.7
1,212,095 - -0.6
1,212,095 - -1.0
1,212,095 - -2.1
1,212,175 - HUW76_05935 0.11 -2.2
1,212,188 + HUW76_05935 0.12 -0.8
1,212,188 + HUW76_05935 0.12 +0.0
1,212,190 + HUW76_05935 0.12 +3.3
1,212,190 + HUW76_05935 0.12 +2.7
1,212,198 - HUW76_05935 0.12 -1.9
1,212,198 - HUW76_05935 0.12 -3.4
1,212,198 - HUW76_05935 0.12 -0.3
1,212,198 - HUW76_05935 0.12 -2.1
1,212,198 - HUW76_05935 0.12 -4.3
1,212,210 - HUW76_05935 0.13 -0.2
1,212,228 - HUW76_05935 0.14 -3.5
1,212,248 - HUW76_05935 0.15 -2.9
1,212,248 - HUW76_05935 0.15 -2.2
1,212,279 + HUW76_05935 0.16 +0.9
1,212,279 + HUW76_05935 0.16 +0.8
1,212,287 - HUW76_05935 0.17 -3.0
1,212,287 - HUW76_05935 0.17 -1.9
1,212,287 - HUW76_05935 0.17 -2.5
1,212,320 - HUW76_05935 0.19 -6.0
1,212,379 + HUW76_05935 0.22 +3.1
1,212,379 + HUW76_05935 0.22 +1.1
1,212,434 - HUW76_05935 0.24 -4.6
1,212,438 + HUW76_05935 0.24 +0.7
1,212,447 + HUW76_05935 0.25 -2.6
1,212,447 - HUW76_05935 0.25 -3.1
1,212,462 - HUW76_05935 0.26 -5.5
1,212,462 - HUW76_05935 0.26 -1.1
1,212,516 - HUW76_05935 0.28 -4.5
1,212,516 - HUW76_05935 0.28 -2.6
1,212,535 + HUW76_05935 0.29 +2.4
1,212,535 + HUW76_05935 0.29 +0.1
1,212,543 + HUW76_05935 0.30 +2.6
1,212,543 + HUW76_05935 0.30 -1.2
1,212,543 - HUW76_05935 0.30 -1.2
1,212,543 - HUW76_05935 0.30 -3.8
1,212,548 - HUW76_05935 0.30 -1.1
1,212,551 - HUW76_05935 0.30 -4.9
1,212,605 + HUW76_05935 0.33 +0.5
1,212,605 + HUW76_05935 0.33 +0.8
1,212,613 - HUW76_05935 0.33 -1.7
1,212,678 - HUW76_05935 0.36 -3.4
1,212,678 - HUW76_05935 0.36 -4.6
1,212,857 - HUW76_05935 0.45 -2.2
1,212,857 - HUW76_05935 0.45 -4.9
1,212,866 - HUW76_05935 0.46 -2.3
1,212,866 - HUW76_05935 0.46 -4.4
1,212,978 - HUW76_05935 0.52 -4.3
1,213,067 + HUW76_05935 0.56 +3.9
1,213,067 + HUW76_05935 0.56 -0.4
1,213,160 + HUW76_05935 0.61 +1.4
1,213,160 + HUW76_05935 0.61 -3.2
1,213,162 + HUW76_05935 0.61 -2.7
1,213,162 + HUW76_05935 0.61 -3.2
1,213,180 - HUW76_05935 0.62 -6.5
1,213,184 + HUW76_05935 0.62 -4.1
1,213,188 + HUW76_05935 0.62 +2.3
1,213,188 + HUW76_05935 0.62 -2.2
1,213,190 + HUW76_05935 0.62 -2.6
1,213,190 + HUW76_05935 0.62 +3.9
1,213,191 - HUW76_05935 0.62 -2.7
1,213,191 - HUW76_05935 0.62 -4.2
1,213,228 + HUW76_05935 0.64 +1.1
1,213,229 - HUW76_05935 0.64 -3.2
1,213,229 - HUW76_05935 0.64 -4.7
1,213,231 - HUW76_05935 0.64 -4.0
1,213,231 - HUW76_05935 0.64 -4.0
1,213,272 + HUW76_05935 0.66 +1.0
1,213,272 + HUW76_05935 0.66 -1.7
1,213,272 + HUW76_05935 0.66 -0.2
1,213,272 + HUW76_05935 0.66 -0.2
1,213,273 + HUW76_05935 0.66 +0.4
1,213,273 + HUW76_05935 0.66 -2.1
1,213,273 + HUW76_05935 0.66 +0.5
1,213,280 - HUW76_05935 0.67 -0.9
1,213,385 - HUW76_05935 0.72 -4.7
1,213,456 - HUW76_05935 0.75 -4.0
1,213,456 - HUW76_05935 0.75 -0.3
1,213,490 - HUW76_05935 0.77 -3.5
1,213,540 - HUW76_05935 0.80 -3.9
1,213,540 - HUW76_05935 0.80 -3.4
1,213,556 - HUW76_05935 0.81 -2.0
1,213,584 + HUW76_05935 0.82 +1.2
1,213,613 - HUW76_05935 0.83 -5.3
1,213,616 + HUW76_05935 0.84 -0.8
1,213,618 + HUW76_05935 0.84 +1.1
1,213,626 - HUW76_05935 0.84 -2.9
1,213,626 - HUW76_05935 0.84 -3.4
1,213,633 + HUW76_05935 0.84 -2.2
1,213,633 + HUW76_05935 0.84 +0.1
1,213,659 + HUW76_05935 0.86 -0.8
1,213,659 + HUW76_05935 0.86 -2.3
1,213,659 - HUW76_05935 0.86 -1.5
1,213,665 + HUW76_05935 0.86 -3.9
1,213,665 + HUW76_05935 0.86 -1.1
1,213,735 - HUW76_05935 0.89 -2.6
1,213,750 + -4.9
1,213,750 + -0.7
1,213,835 + -1.5
1,213,835 + +0.8
1,213,924 - -1.8
1,213,924 - -2.8
1,214,022 + +1.2
1,214,037 - -1.1
1,214,037 - -2.1
1,214,091 + +0.2
1,214,138 - HUW76_05940 0.11 +1.6
1,214,139 - HUW76_05940 0.11 +1.4
1,214,181 - HUW76_05940 0.16 +0.2
1,214,189 - HUW76_05940 0.17 +0.9
1,214,190 - HUW76_05940 0.17 -0.9
1,214,254 - HUW76_05940 0.25 +1.2
1,214,264 + HUW76_05940 0.26 -2.5
1,214,264 + HUW76_05940 0.26 +0.1
1,214,351 - HUW76_05940 0.36 -3.4
1,214,394 - HUW76_05940 0.42 -2.1
1,214,404 - HUW76_05940 0.43 -0.7
1,214,404 - HUW76_05940 0.43 -0.1
1,214,455 + HUW76_05940 0.49 +1.7
1,214,463 - HUW76_05940 0.50 -1.7
1,214,463 - HUW76_05940 0.50 +3.4
1,214,554 + HUW76_05940 0.61 +1.1
1,214,562 - HUW76_05940 0.62 +0.8
1,214,562 - HUW76_05940 0.62 -2.9
1,214,562 - HUW76_05940 0.62 -0.6
1,214,563 + HUW76_05940 0.62 +1.2
1,214,605 + HUW76_05940 0.67 +1.5
1,214,605 + HUW76_05940 0.67 +5.4
1,214,605 + HUW76_05940 0.67 -3.8
1,214,613 - HUW76_05940 0.68 -0.5
1,214,613 - HUW76_05940 0.68 +2.2
1,214,613 - HUW76_05940 0.68 -3.4
1,214,613 - HUW76_05940 0.68 -0.8
1,214,613 - HUW76_05940 0.68 -0.7
1,214,613 - HUW76_05940 0.68 -0.1
1,214,623 - HUW76_05940 0.70 +1.9
1,214,741 - HUW76_05940 0.84 +0.1
1,214,760 - HUW76_05940 0.86 +1.0
1,214,760 - HUW76_05940 0.86 +1.4
1,214,795 + +1.6
1,214,807 - -0.3
1,214,867 - +3.1
1,214,867 - -0.3
1,214,875 - -0.4
1,214,940 + -0.4
1,214,940 + -0.9

Or see this region's nucleotide sequence