Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04780

Experiment: RCM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04775 and HUW76_04780 are separated by 244 nucleotidesHUW76_04780 and HUW76_04785 are separated by 18 nucleotides HUW76_04775: HUW76_04775 - ROK family protein, at 961,767 to 962,885 _04775 HUW76_04780: HUW76_04780 - histidine ammonia-lyase, at 963,130 to 964,695 _04780 HUW76_04785: HUW76_04785 - urocanate hydratase, at 964,714 to 966,735 _04785 Position (kb) 963 964 965Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 962.175 kb on + strand, within HUW76_04775at 962.177 kb on + strand, within HUW76_04775at 962.178 kb on - strand, within HUW76_04775at 962.185 kb on - strand, within HUW76_04775at 962.185 kb on - strand, within HUW76_04775at 962.234 kb on + strand, within HUW76_04775at 962.296 kb on - strand, within HUW76_04775at 962.296 kb on - strand, within HUW76_04775at 962.300 kb on + strand, within HUW76_04775at 962.302 kb on + strand, within HUW76_04775at 962.401 kb on - strand, within HUW76_04775at 962.401 kb on - strand, within HUW76_04775at 962.470 kb on - strand, within HUW76_04775at 962.470 kb on - strand, within HUW76_04775at 962.485 kb on - strand, within HUW76_04775at 962.596 kb on + strand, within HUW76_04775at 962.596 kb on + strand, within HUW76_04775at 962.604 kb on - strand, within HUW76_04775at 962.604 kb on - strand, within HUW76_04775at 962.670 kb on - strand, within HUW76_04775at 962.670 kb on - strand, within HUW76_04775at 962.807 kb on - strandat 962.807 kb on - strandat 962.834 kb on - strandat 962.917 kb on - strandat 963.143 kb on + strandat 963.177 kb on - strandat 963.177 kb on - strandat 963.207 kb on - strandat 963.207 kb on - strandat 963.232 kb on - strandat 963.334 kb on - strand, within HUW76_04780at 963.334 kb on - strand, within HUW76_04780at 963.416 kb on - strand, within HUW76_04780at 963.416 kb on - strand, within HUW76_04780at 963.420 kb on + strand, within HUW76_04780at 963.451 kb on - strand, within HUW76_04780at 963.462 kb on + strand, within HUW76_04780at 963.469 kb on + strand, within HUW76_04780at 963.469 kb on + strand, within HUW76_04780at 963.471 kb on + strand, within HUW76_04780at 963.612 kb on + strand, within HUW76_04780at 963.612 kb on + strand, within HUW76_04780at 963.612 kb on + strand, within HUW76_04780at 963.612 kb on + strand, within HUW76_04780at 963.620 kb on - strand, within HUW76_04780at 963.620 kb on - strand, within HUW76_04780at 963.620 kb on - strand, within HUW76_04780at 963.622 kb on + strand, within HUW76_04780at 963.622 kb on + strand, within HUW76_04780at 963.698 kb on - strand, within HUW76_04780at 963.731 kb on + strand, within HUW76_04780at 963.756 kb on + strand, within HUW76_04780at 963.765 kb on - strand, within HUW76_04780at 963.781 kb on + strand, within HUW76_04780at 963.781 kb on + strand, within HUW76_04780at 963.786 kb on + strand, within HUW76_04780at 963.802 kb on - strand, within HUW76_04780at 963.802 kb on - strand, within HUW76_04780at 963.817 kb on + strand, within HUW76_04780at 963.819 kb on - strand, within HUW76_04780at 963.819 kb on - strand, within HUW76_04780at 963.826 kb on + strand, within HUW76_04780at 963.826 kb on + strand, within HUW76_04780at 963.829 kb on - strand, within HUW76_04780at 963.829 kb on - strand, within HUW76_04780at 963.909 kb on + strand, within HUW76_04780at 963.909 kb on + strand, within HUW76_04780at 963.922 kb on + strand, within HUW76_04780at 963.958 kb on - strand, within HUW76_04780at 963.958 kb on - strand, within HUW76_04780at 964.030 kb on + strand, within HUW76_04780at 964.030 kb on + strand, within HUW76_04780at 964.040 kb on + strand, within HUW76_04780at 964.040 kb on + strand, within HUW76_04780at 964.040 kb on + strand, within HUW76_04780at 964.040 kb on + strand, within HUW76_04780at 964.048 kb on - strand, within HUW76_04780at 964.074 kb on + strand, within HUW76_04780at 964.107 kb on + strand, within HUW76_04780at 964.116 kb on - strand, within HUW76_04780at 964.116 kb on - strand, within HUW76_04780at 964.147 kb on + strand, within HUW76_04780at 964.152 kb on + strand, within HUW76_04780at 964.160 kb on - strand, within HUW76_04780at 964.160 kb on - strand, within HUW76_04780at 964.160 kb on - strand, within HUW76_04780at 964.160 kb on - strand, within HUW76_04780at 964.189 kb on - strand, within HUW76_04780at 964.250 kb on + strand, within HUW76_04780at 964.292 kb on + strand, within HUW76_04780at 964.292 kb on + strand, within HUW76_04780at 964.309 kb on + strand, within HUW76_04780at 964.309 kb on + strand, within HUW76_04780at 964.317 kb on + strand, within HUW76_04780at 964.317 kb on + strand, within HUW76_04780at 964.317 kb on - strand, within HUW76_04780at 964.317 kb on - strand, within HUW76_04780at 964.317 kb on - strand, within HUW76_04780at 964.317 kb on - strand, within HUW76_04780at 964.317 kb on - strand, within HUW76_04780at 964.317 kb on - strand, within HUW76_04780at 964.317 kb on - strand, within HUW76_04780at 964.317 kb on - strand, within HUW76_04780at 964.319 kb on + strand, within HUW76_04780at 964.319 kb on + strand, within HUW76_04780at 964.319 kb on + strand, within HUW76_04780at 964.319 kb on + strand, within HUW76_04780at 964.319 kb on + strand, within HUW76_04780at 964.327 kb on - strand, within HUW76_04780at 964.348 kb on + strand, within HUW76_04780at 964.348 kb on + strand, within HUW76_04780at 964.356 kb on - strand, within HUW76_04780at 964.483 kb on - strand, within HUW76_04780at 964.485 kb on + strand, within HUW76_04780at 964.493 kb on - strand, within HUW76_04780at 964.509 kb on + strand, within HUW76_04780at 964.509 kb on + strand, within HUW76_04780at 964.517 kb on - strand, within HUW76_04780at 964.517 kb on - strand, within HUW76_04780at 964.524 kb on + strand, within HUW76_04780at 964.529 kb on + strand, within HUW76_04780at 964.593 kb on + strandat 964.593 kb on + strandat 964.624 kb on + strandat 964.624 kb on + strandat 964.702 kb on + strandat 964.748 kb on + strandat 964.767 kb on + strandat 964.803 kb on + strandat 964.808 kb on + strandat 964.808 kb on + strandat 965.033 kb on + strand, within HUW76_04785at 965.033 kb on + strand, within HUW76_04785at 965.033 kb on + strand, within HUW76_04785at 965.074 kb on + strand, within HUW76_04785at 965.074 kb on + strand, within HUW76_04785at 965.083 kb on - strand, within HUW76_04785at 965.138 kb on + strand, within HUW76_04785at 965.139 kb on + strand, within HUW76_04785at 965.139 kb on + strand, within HUW76_04785at 965.139 kb on + strand, within HUW76_04785at 965.187 kb on - strand, within HUW76_04785at 965.239 kb on + strand, within HUW76_04785at 965.239 kb on + strand, within HUW76_04785at 965.240 kb on + strand, within HUW76_04785at 965.248 kb on - strand, within HUW76_04785at 965.248 kb on - strand, within HUW76_04785at 965.321 kb on - strand, within HUW76_04785at 965.358 kb on + strand, within HUW76_04785at 965.379 kb on - strand, within HUW76_04785at 965.399 kb on + strand, within HUW76_04785at 965.424 kb on + strand, within HUW76_04785at 965.432 kb on - strand, within HUW76_04785at 965.432 kb on - strand, within HUW76_04785at 965.449 kb on + strand, within HUW76_04785at 965.449 kb on + strand, within HUW76_04785at 965.511 kb on + strand, within HUW76_04785at 965.511 kb on + strand, within HUW76_04785at 965.524 kb on - strand, within HUW76_04785at 965.524 kb on - strand, within HUW76_04785at 965.524 kb on - strand, within HUW76_04785at 965.558 kb on + strand, within HUW76_04785at 965.591 kb on + strand, within HUW76_04785at 965.600 kb on - strand, within HUW76_04785at 965.660 kb on + strand, within HUW76_04785

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM (C)
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962,175 + HUW76_04775 0.36 -0.8
962,177 + HUW76_04775 0.37 -3.2
962,178 - HUW76_04775 0.37 +3.2
962,185 - HUW76_04775 0.37 +3.0
962,185 - HUW76_04775 0.37 +2.7
962,234 + HUW76_04775 0.42 -0.9
962,296 - HUW76_04775 0.47 -0.4
962,296 - HUW76_04775 0.47 +3.6
962,300 + HUW76_04775 0.48 -3.2
962,302 + HUW76_04775 0.48 -1.6
962,401 - HUW76_04775 0.57 +1.3
962,401 - HUW76_04775 0.57 -1.8
962,470 - HUW76_04775 0.63 +2.9
962,470 - HUW76_04775 0.63 +2.9
962,485 - HUW76_04775 0.64 +3.2
962,596 + HUW76_04775 0.74 -1.6
962,596 + HUW76_04775 0.74 +1.2
962,604 - HUW76_04775 0.75 +3.1
962,604 - HUW76_04775 0.75 +1.4
962,670 - HUW76_04775 0.81 +1.5
962,670 - HUW76_04775 0.81 +2.8
962,807 - +2.9
962,807 - +2.1
962,834 - -0.7
962,917 - +2.4
963,143 + -2.4
963,177 - +1.3
963,177 - -1.1
963,207 - -0.4
963,207 - -0.7
963,232 - +1.1
963,334 - HUW76_04780 0.13 +3.4
963,334 - HUW76_04780 0.13 +0.6
963,416 - HUW76_04780 0.18 -1.8
963,416 - HUW76_04780 0.18 -1.9
963,420 + HUW76_04780 0.19 -3.3
963,451 - HUW76_04780 0.20 +0.1
963,462 + HUW76_04780 0.21 -2.1
963,469 + HUW76_04780 0.22 -2.6
963,469 + HUW76_04780 0.22 -3.5
963,471 + HUW76_04780 0.22 -2.2
963,612 + HUW76_04780 0.31 -2.7
963,612 + HUW76_04780 0.31 -1.8
963,612 + HUW76_04780 0.31 -2.8
963,612 + HUW76_04780 0.31 -1.2
963,620 - HUW76_04780 0.31 +2.3
963,620 - HUW76_04780 0.31 +0.8
963,620 - HUW76_04780 0.31 -3.6
963,622 + HUW76_04780 0.31 -4.3
963,622 + HUW76_04780 0.31 -3.7
963,698 - HUW76_04780 0.36 -0.1
963,731 + HUW76_04780 0.38 -4.2
963,756 + HUW76_04780 0.40 -1.9
963,765 - HUW76_04780 0.41 -3.9
963,781 + HUW76_04780 0.42 -4.2
963,781 + HUW76_04780 0.42 -5.7
963,786 + HUW76_04780 0.42 -4.9
963,802 - HUW76_04780 0.43 +0.8
963,802 - HUW76_04780 0.43 -3.7
963,817 + HUW76_04780 0.44 +0.3
963,819 - HUW76_04780 0.44 -1.0
963,819 - HUW76_04780 0.44 -3.2
963,826 + HUW76_04780 0.44 -1.7
963,826 + HUW76_04780 0.44 -3.6
963,829 - HUW76_04780 0.45 -4.6
963,829 - HUW76_04780 0.45 -1.9
963,909 + HUW76_04780 0.50 -1.1
963,909 + HUW76_04780 0.50 -2.2
963,922 + HUW76_04780 0.51 +2.8
963,958 - HUW76_04780 0.53 +2.3
963,958 - HUW76_04780 0.53 -0.2
964,030 + HUW76_04780 0.57 -4.0
964,030 + HUW76_04780 0.57 -3.5
964,040 + HUW76_04780 0.58 -2.7
964,040 + HUW76_04780 0.58 -1.7
964,040 + HUW76_04780 0.58 -1.4
964,040 + HUW76_04780 0.58 -0.9
964,048 - HUW76_04780 0.59 +1.0
964,074 + HUW76_04780 0.60 +3.3
964,107 + HUW76_04780 0.62 -2.9
964,116 - HUW76_04780 0.63 -3.2
964,116 - HUW76_04780 0.63 -2.4
964,147 + HUW76_04780 0.65 -2.2
964,152 + HUW76_04780 0.65 -3.4
964,160 - HUW76_04780 0.66 -3.4
964,160 - HUW76_04780 0.66 +1.8
964,160 - HUW76_04780 0.66 -3.0
964,160 - HUW76_04780 0.66 -2.3
964,189 - HUW76_04780 0.68 +0.2
964,250 + HUW76_04780 0.72 -3.1
964,292 + HUW76_04780 0.74 -2.5
964,292 + HUW76_04780 0.74 +0.3
964,309 + HUW76_04780 0.75 -0.7
964,309 + HUW76_04780 0.75 -3.6
964,317 + HUW76_04780 0.76 -2.5
964,317 + HUW76_04780 0.76 -0.9
964,317 - HUW76_04780 0.76 +2.5
964,317 - HUW76_04780 0.76 -2.1
964,317 - HUW76_04780 0.76 -2.0
964,317 - HUW76_04780 0.76 -4.0
964,317 - HUW76_04780 0.76 -4.9
964,317 - HUW76_04780 0.76 -0.5
964,317 - HUW76_04780 0.76 -0.8
964,317 - HUW76_04780 0.76 +1.3
964,319 + HUW76_04780 0.76 -0.8
964,319 + HUW76_04780 0.76 -2.5
964,319 + HUW76_04780 0.76 -2.8
964,319 + HUW76_04780 0.76 -3.0
964,319 + HUW76_04780 0.76 -4.1
964,327 - HUW76_04780 0.76 -0.4
964,348 + HUW76_04780 0.78 -0.5
964,348 + HUW76_04780 0.78 -1.3
964,356 - HUW76_04780 0.78 -3.1
964,483 - HUW76_04780 0.86 -2.3
964,485 + HUW76_04780 0.87 -4.5
964,493 - HUW76_04780 0.87 +1.4
964,509 + HUW76_04780 0.88 -1.9
964,509 + HUW76_04780 0.88 -4.7
964,517 - HUW76_04780 0.89 -2.5
964,517 - HUW76_04780 0.89 +1.5
964,524 + HUW76_04780 0.89 -2.2
964,529 + HUW76_04780 0.89 -0.7
964,593 + -2.8
964,593 + +1.5
964,624 + -5.0
964,624 + -2.2
964,702 + -0.3
964,748 + -2.8
964,767 + -2.2
964,803 + -4.3
964,808 + -3.2
964,808 + -2.3
965,033 + HUW76_04785 0.16 -4.4
965,033 + HUW76_04785 0.16 -3.5
965,033 + HUW76_04785 0.16 -4.5
965,074 + HUW76_04785 0.18 -2.4
965,074 + HUW76_04785 0.18 -1.2
965,083 - HUW76_04785 0.18 -1.2
965,138 + HUW76_04785 0.21 -1.2
965,139 + HUW76_04785 0.21 -4.0
965,139 + HUW76_04785 0.21 -3.7
965,139 + HUW76_04785 0.21 -3.8
965,187 - HUW76_04785 0.23 -1.6
965,239 + HUW76_04785 0.26 -4.3
965,239 + HUW76_04785 0.26 -4.0
965,240 + HUW76_04785 0.26 -3.3
965,248 - HUW76_04785 0.26 -1.8
965,248 - HUW76_04785 0.26 -2.3
965,321 - HUW76_04785 0.30 -2.4
965,358 + HUW76_04785 0.32 -3.9
965,379 - HUW76_04785 0.33 -1.2
965,399 + HUW76_04785 0.34 -4.6
965,424 + HUW76_04785 0.35 -4.7
965,432 - HUW76_04785 0.36 -0.4
965,432 - HUW76_04785 0.36 -2.3
965,449 + HUW76_04785 0.36 -3.4
965,449 + HUW76_04785 0.36 -4.5
965,511 + HUW76_04785 0.39 -2.5
965,511 + HUW76_04785 0.39 -3.0
965,524 - HUW76_04785 0.40 +1.2
965,524 - HUW76_04785 0.40 +1.2
965,524 - HUW76_04785 0.40 -1.6
965,558 + HUW76_04785 0.42 -5.1
965,591 + HUW76_04785 0.43 -5.5
965,600 - HUW76_04785 0.44 -1.2
965,660 + HUW76_04785 0.47 -3.3

Or see this region's nucleotide sequence