Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03990

Experiment: RCM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03980 and HUW76_03985 are separated by 69 nucleotidesHUW76_03985 and HUW76_03990 are separated by 66 nucleotidesHUW76_03990 and HUW76_03995 are separated by 124 nucleotidesHUW76_03995 and HUW76_04000 are separated by 59 nucleotides HUW76_03980: HUW76_03980 - HAD-IIA family hydrolase, at 801,639 to 802,433 _03980 HUW76_03985: HUW76_03985 - nitroreductase family protein, at 802,503 to 803,018 _03985 HUW76_03990: HUW76_03990 - hypothetical protein, at 803,085 to 803,288 _03990 HUW76_03995: HUW76_03995 - iron transporter, at 803,413 to 804,096 _03995 HUW76_04000: HUW76_04000 - FTR1 family iron permease, at 804,156 to 805,472 _04000 Position (kb) 803 804Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 802.169 kb on + strand, within HUW76_03980at 802.182 kb on + strand, within HUW76_03980at 802.182 kb on + strand, within HUW76_03980at 802.321 kb on + strand, within HUW76_03980at 802.376 kb on + strandat 802.539 kb on - strandat 802.545 kb on - strandat 802.575 kb on - strand, within HUW76_03985at 802.812 kb on + strand, within HUW76_03985at 802.812 kb on + strand, within HUW76_03985at 802.838 kb on + strand, within HUW76_03985at 802.838 kb on + strand, within HUW76_03985at 802.861 kb on + strand, within HUW76_03985at 802.868 kb on - strand, within HUW76_03985at 802.868 kb on - strand, within HUW76_03985at 802.872 kb on - strand, within HUW76_03985at 802.872 kb on - strand, within HUW76_03985at 802.933 kb on + strand, within HUW76_03985at 802.933 kb on + strand, within HUW76_03985at 802.941 kb on - strand, within HUW76_03985at 802.941 kb on - strand, within HUW76_03985at 802.953 kb on + strand, within HUW76_03985at 803.059 kb on - strandat 803.059 kb on - strandat 803.133 kb on + strand, within HUW76_03990at 803.133 kb on + strand, within HUW76_03990at 803.163 kb on + strand, within HUW76_03990at 803.163 kb on + strand, within HUW76_03990at 803.235 kb on + strand, within HUW76_03990at 803.235 kb on + strand, within HUW76_03990at 803.247 kb on + strand, within HUW76_03990at 803.247 kb on + strand, within HUW76_03990at 803.254 kb on - strand, within HUW76_03990at 803.254 kb on - strand, within HUW76_03990at 803.438 kb on + strandat 803.446 kb on - strandat 803.446 kb on - strandat 803.446 kb on - strandat 803.446 kb on - strandat 803.533 kb on + strand, within HUW76_03995at 803.533 kb on + strand, within HUW76_03995at 803.548 kb on + strand, within HUW76_03995at 803.548 kb on + strand, within HUW76_03995at 803.599 kb on + strand, within HUW76_03995at 803.661 kb on + strand, within HUW76_03995at 803.691 kb on + strand, within HUW76_03995at 803.710 kb on - strand, within HUW76_03995at 803.710 kb on - strand, within HUW76_03995at 803.710 kb on - strand, within HUW76_03995at 803.719 kb on + strand, within HUW76_03995at 803.719 kb on + strand, within HUW76_03995at 803.774 kb on + strand, within HUW76_03995at 803.779 kb on - strand, within HUW76_03995at 803.822 kb on + strand, within HUW76_03995at 803.848 kb on + strand, within HUW76_03995at 803.851 kb on - strand, within HUW76_03995at 803.856 kb on - strand, within HUW76_03995at 803.858 kb on + strand, within HUW76_03995at 803.858 kb on + strand, within HUW76_03995at 803.858 kb on + strand, within HUW76_03995at 803.873 kb on + strand, within HUW76_03995at 803.881 kb on - strand, within HUW76_03995at 803.881 kb on - strand, within HUW76_03995at 803.888 kb on + strand, within HUW76_03995at 803.896 kb on - strand, within HUW76_03995at 803.896 kb on - strand, within HUW76_03995at 803.970 kb on - strand, within HUW76_03995at 803.970 kb on - strand, within HUW76_03995at 803.991 kb on - strand, within HUW76_03995at 803.991 kb on - strand, within HUW76_03995at 804.049 kb on - strandat 804.052 kb on + strandat 804.053 kb on - strandat 804.053 kb on - strandat 804.053 kb on - strandat 804.060 kb on - strandat 804.060 kb on - strandat 804.060 kb on - strandat 804.060 kb on - strandat 804.221 kb on - strandat 804.230 kb on - strandat 804.242 kb on - strandat 804.242 kb on - strandat 804.257 kb on + strandat 804.265 kb on + strandat 804.265 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM (C)
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802,169 + HUW76_03980 0.67 -1.0
802,182 + HUW76_03980 0.68 -0.1
802,182 + HUW76_03980 0.68 +1.7
802,321 + HUW76_03980 0.86 -0.3
802,376 + +1.1
802,539 - +2.5
802,545 - +1.2
802,575 - HUW76_03985 0.14 +2.6
802,812 + HUW76_03985 0.60 +0.8
802,812 + HUW76_03985 0.60 +0.3
802,838 + HUW76_03985 0.65 -0.8
802,838 + HUW76_03985 0.65 -0.1
802,861 + HUW76_03985 0.69 -0.7
802,868 - HUW76_03985 0.71 +0.9
802,868 - HUW76_03985 0.71 -2.0
802,872 - HUW76_03985 0.72 -2.9
802,872 - HUW76_03985 0.72 +4.9
802,933 + HUW76_03985 0.83 +0.4
802,933 + HUW76_03985 0.83 -0.4
802,941 - HUW76_03985 0.85 -2.0
802,941 - HUW76_03985 0.85 +0.9
802,953 + HUW76_03985 0.87 +0.2
803,059 - -0.9
803,059 - +0.4
803,133 + HUW76_03990 0.24 -1.9
803,133 + HUW76_03990 0.24 -5.6
803,163 + HUW76_03990 0.38 +0.8
803,163 + HUW76_03990 0.38 -0.4
803,235 + HUW76_03990 0.74 -4.2
803,235 + HUW76_03990 0.74 -4.1
803,247 + HUW76_03990 0.79 -3.1
803,247 + HUW76_03990 0.79 -4.4
803,254 - HUW76_03990 0.83 +1.1
803,254 - HUW76_03990 0.83 +0.1
803,438 + +0.4
803,446 - -1.8
803,446 - -0.1
803,446 - -2.3
803,446 - +2.4
803,533 + HUW76_03995 0.18 +0.5
803,533 + HUW76_03995 0.18 +5.2
803,548 + HUW76_03995 0.20 +1.5
803,548 + HUW76_03995 0.20 -0.5
803,599 + HUW76_03995 0.27 +2.4
803,661 + HUW76_03995 0.36 +0.6
803,691 + HUW76_03995 0.41 +1.7
803,710 - HUW76_03995 0.43 -0.3
803,710 - HUW76_03995 0.43 -0.0
803,710 - HUW76_03995 0.43 -0.8
803,719 + HUW76_03995 0.45 -3.4
803,719 + HUW76_03995 0.45 +1.0
803,774 + HUW76_03995 0.53 +1.0
803,779 - HUW76_03995 0.54 -0.8
803,822 + HUW76_03995 0.60 +3.5
803,848 + HUW76_03995 0.64 -1.1
803,851 - HUW76_03995 0.64 +2.0
803,856 - HUW76_03995 0.65 +0.2
803,858 + HUW76_03995 0.65 +1.1
803,858 + HUW76_03995 0.65 +2.0
803,858 + HUW76_03995 0.65 +0.7
803,873 + HUW76_03995 0.67 +1.1
803,881 - HUW76_03995 0.68 -0.2
803,881 - HUW76_03995 0.68 +0.1
803,888 + HUW76_03995 0.69 +0.3
803,896 - HUW76_03995 0.71 +0.9
803,896 - HUW76_03995 0.71 -1.3
803,970 - HUW76_03995 0.81 -0.3
803,970 - HUW76_03995 0.81 +0.5
803,991 - HUW76_03995 0.85 +1.5
803,991 - HUW76_03995 0.85 -1.5
804,049 - +0.9
804,052 + -3.1
804,053 - -0.8
804,053 - -2.2
804,053 - -0.2
804,060 - -2.7
804,060 - -0.4
804,060 - +0.9
804,060 - +4.0
804,221 - +0.4
804,230 - +0.0
804,242 - -3.2
804,242 - +1.5
804,257 + +1.7
804,265 + -2.2
804,265 + +2.3

Or see this region's nucleotide sequence