Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03720

Experiment: RCM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHUW76_03715 and HUW76_03720 are separated by 126 nucleotidesHUW76_03720 and HUW76_03725 are separated by 16 nucleotidesHUW76_03725 and HUW76_03730 are separated by 69 nucleotides HUW76_03715: HUW76_03715 - cupin domain-containing protein, at 741,803 to 742,471 _03715 HUW76_03720: HUW76_03720 - single-stranded DNA-binding protein, at 742,598 to 743,053 _03720 HUW76_03725: HUW76_03725 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 743,070 to 743,648 _03725 HUW76_03730: HUW76_03730 - hypothetical protein, at 743,718 to 743,936 _03730 Position (kb) 742 743 744Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 741.619 kb on - strandat 741.685 kb on + strandat 741.685 kb on + strandat 741.693 kb on - strandat 741.718 kb on - strandat 741.718 kb on - strandat 741.792 kb on + strandat 741.792 kb on + strandat 741.797 kb on + strandat 741.814 kb on + strandat 741.814 kb on + strandat 741.877 kb on - strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.931 kb on - strand, within HUW76_03715at 741.931 kb on - strand, within HUW76_03715at 741.938 kb on + strand, within HUW76_03715at 741.944 kb on - strand, within HUW76_03715at 741.946 kb on - strand, within HUW76_03715at 741.946 kb on - strand, within HUW76_03715at 741.962 kb on + strand, within HUW76_03715at 741.962 kb on + strand, within HUW76_03715at 741.970 kb on - strand, within HUW76_03715at 741.970 kb on - strand, within HUW76_03715at 741.977 kb on - strand, within HUW76_03715at 741.978 kb on - strand, within HUW76_03715at 741.978 kb on - strand, within HUW76_03715at 741.979 kb on + strand, within HUW76_03715at 741.979 kb on + strand, within HUW76_03715at 741.987 kb on - strand, within HUW76_03715at 741.988 kb on - strand, within HUW76_03715at 742.014 kb on - strand, within HUW76_03715at 742.146 kb on + strand, within HUW76_03715at 742.146 kb on + strand, within HUW76_03715at 742.222 kb on - strand, within HUW76_03715at 742.222 kb on - strand, within HUW76_03715at 742.284 kb on - strand, within HUW76_03715at 742.285 kb on + strand, within HUW76_03715at 742.285 kb on + strand, within HUW76_03715at 742.293 kb on - strand, within HUW76_03715at 742.301 kb on - strand, within HUW76_03715at 742.301 kb on - strand, within HUW76_03715at 742.318 kb on - strand, within HUW76_03715at 742.358 kb on - strand, within HUW76_03715at 742.379 kb on - strand, within HUW76_03715at 742.379 kb on - strand, within HUW76_03715at 742.421 kb on + strandat 742.438 kb on + strandat 742.438 kb on + strandat 742.440 kb on + strandat 742.446 kb on - strandat 742.446 kb on - strandat 742.446 kb on - strandat 742.446 kb on - strandat 742.446 kb on - strandat 743.146 kb on + strand, within HUW76_03725at 743.146 kb on + strand, within HUW76_03725at 743.146 kb on + strand, within HUW76_03725at 743.146 kb on + strand, within HUW76_03725at 743.169 kb on - strand, within HUW76_03725at 743.191 kb on + strand, within HUW76_03725at 743.263 kb on + strand, within HUW76_03725at 743.303 kb on + strand, within HUW76_03725at 743.350 kb on - strand, within HUW76_03725at 743.413 kb on + strand, within HUW76_03725at 743.458 kb on + strand, within HUW76_03725at 743.468 kb on + strand, within HUW76_03725at 743.468 kb on + strand, within HUW76_03725at 743.468 kb on + strand, within HUW76_03725at 743.468 kb on + strand, within HUW76_03725at 743.468 kb on + strand, within HUW76_03725at 743.476 kb on - strand, within HUW76_03725at 743.476 kb on - strand, within HUW76_03725at 743.478 kb on + strand, within HUW76_03725at 743.478 kb on + strand, within HUW76_03725at 743.478 kb on + strand, within HUW76_03725at 743.486 kb on - strand, within HUW76_03725at 743.486 kb on - strand, within HUW76_03725at 743.497 kb on + strand, within HUW76_03725at 743.497 kb on + strand, within HUW76_03725at 743.497 kb on + strand, within HUW76_03725at 743.517 kb on + strand, within HUW76_03725at 743.517 kb on + strand, within HUW76_03725at 743.517 kb on - strand, within HUW76_03725at 743.529 kb on + strand, within HUW76_03725at 743.561 kb on - strand, within HUW76_03725at 743.579 kb on - strand, within HUW76_03725at 743.579 kb on - strand, within HUW76_03725at 743.579 kb on - strand, within HUW76_03725at 743.621 kb on + strandat 743.648 kb on + strandat 743.745 kb on + strand, within HUW76_03730at 743.745 kb on + strand, within HUW76_03730at 743.745 kb on + strand, within HUW76_03730at 743.745 kb on + strand, within HUW76_03730at 743.745 kb on + strand, within HUW76_03730at 743.745 kb on + strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.769 kb on + strand, within HUW76_03730at 743.853 kb on - strand, within HUW76_03730at 743.853 kb on - strand, within HUW76_03730at 743.887 kb on - strand, within HUW76_03730at 743.887 kb on - strand, within HUW76_03730

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCM (C)
remove
741,619 - +0.4
741,685 + +0.6
741,685 + -2.5
741,693 - -1.3
741,718 - -0.2
741,718 - -1.1
741,792 + +0.1
741,792 + -0.1
741,797 + +1.5
741,814 + -1.0
741,814 + -1.0
741,877 - HUW76_03715 0.11 -1.5
741,923 + HUW76_03715 0.18 -1.0
741,923 + HUW76_03715 0.18 -0.1
741,923 + HUW76_03715 0.18 +1.4
741,923 + HUW76_03715 0.18 -2.7
741,923 + HUW76_03715 0.18 +2.1
741,923 + HUW76_03715 0.18 +1.1
741,931 - HUW76_03715 0.19 +0.6
741,931 - HUW76_03715 0.19 +0.0
741,938 + HUW76_03715 0.20 -2.0
741,944 - HUW76_03715 0.21 +1.1
741,946 - HUW76_03715 0.21 -1.4
741,946 - HUW76_03715 0.21 +0.4
741,962 + HUW76_03715 0.24 +0.1
741,962 + HUW76_03715 0.24 +2.3
741,970 - HUW76_03715 0.25 +0.7
741,970 - HUW76_03715 0.25 -0.5
741,977 - HUW76_03715 0.26 +0.3
741,978 - HUW76_03715 0.26 -0.9
741,978 - HUW76_03715 0.26 -2.0
741,979 + HUW76_03715 0.26 -0.9
741,979 + HUW76_03715 0.26 -1.8
741,987 - HUW76_03715 0.28 -1.2
741,988 - HUW76_03715 0.28 -2.5
742,014 - HUW76_03715 0.32 +0.7
742,146 + HUW76_03715 0.51 +3.0
742,146 + HUW76_03715 0.51 -2.0
742,222 - HUW76_03715 0.63 -0.3
742,222 - HUW76_03715 0.63 +0.8
742,284 - HUW76_03715 0.72 +0.3
742,285 + HUW76_03715 0.72 +0.7
742,285 + HUW76_03715 0.72 -1.7
742,293 - HUW76_03715 0.73 +0.5
742,301 - HUW76_03715 0.74 +0.5
742,301 - HUW76_03715 0.74 +0.6
742,318 - HUW76_03715 0.77 +0.9
742,358 - HUW76_03715 0.83 -2.0
742,379 - HUW76_03715 0.86 -0.2
742,379 - HUW76_03715 0.86 -1.2
742,421 + +1.4
742,438 + -0.2
742,438 + -0.1
742,440 + -3.5
742,446 - +1.1
742,446 - -0.4
742,446 - +0.8
742,446 - -0.5
742,446 - -0.6
743,146 + HUW76_03725 0.13 -3.0
743,146 + HUW76_03725 0.13 -4.1
743,146 + HUW76_03725 0.13 -3.6
743,146 + HUW76_03725 0.13 -2.1
743,169 - HUW76_03725 0.17 -4.6
743,191 + HUW76_03725 0.21 -1.9
743,263 + HUW76_03725 0.33 -0.8
743,303 + HUW76_03725 0.40 -0.7
743,350 - HUW76_03725 0.48 -3.9
743,413 + HUW76_03725 0.59 -2.3
743,458 + HUW76_03725 0.67 -0.8
743,468 + HUW76_03725 0.69 -1.1
743,468 + HUW76_03725 0.69 -1.2
743,468 + HUW76_03725 0.69 -3.2
743,468 + HUW76_03725 0.69 -1.7
743,468 + HUW76_03725 0.69 -4.7
743,476 - HUW76_03725 0.70 -3.3
743,476 - HUW76_03725 0.70 -0.4
743,478 + HUW76_03725 0.70 -1.8
743,478 + HUW76_03725 0.70 -2.8
743,478 + HUW76_03725 0.70 -3.5
743,486 - HUW76_03725 0.72 -2.0
743,486 - HUW76_03725 0.72 -2.6
743,497 + HUW76_03725 0.74 -2.8
743,497 + HUW76_03725 0.74 -3.5
743,497 + HUW76_03725 0.74 -1.7
743,517 + HUW76_03725 0.77 -4.4
743,517 + HUW76_03725 0.77 -4.5
743,517 - HUW76_03725 0.77 -1.8
743,529 + HUW76_03725 0.79 -2.4
743,561 - HUW76_03725 0.85 -4.5
743,579 - HUW76_03725 0.88 -2.5
743,579 - HUW76_03725 0.88 -1.6
743,579 - HUW76_03725 0.88 -1.6
743,621 + -0.6
743,648 + +0.3
743,745 + HUW76_03730 0.12 +1.8
743,745 + HUW76_03730 0.12 -1.3
743,745 + HUW76_03730 0.12 +1.0
743,745 + HUW76_03730 0.12 +0.3
743,745 + HUW76_03730 0.12 -1.3
743,745 + HUW76_03730 0.12 -1.6
743,753 - HUW76_03730 0.16 +0.9
743,753 - HUW76_03730 0.16 -0.2
743,753 - HUW76_03730 0.16 -0.5
743,753 - HUW76_03730 0.16 -2.8
743,753 - HUW76_03730 0.16 -1.8
743,753 - HUW76_03730 0.16 +1.7
743,753 - HUW76_03730 0.16 -1.0
743,769 + HUW76_03730 0.23 -0.6
743,853 - HUW76_03730 0.62 -0.7
743,853 - HUW76_03730 0.62 +1.2
743,887 - HUW76_03730 0.77 -1.0
743,887 - HUW76_03730 0.77 -2.4

Or see this region's nucleotide sequence