Experiment: RCM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_02870 and HUW76_02875 are separated by 397 nucleotides HUW76_02875 and HUW76_02880 are separated by 229 nucleotides HUW76_02880 and HUW76_02885 are separated by 3 nucleotides
HUW76_02870: HUW76_02870 - molecular chaperone HtpG, at 587,920 to 589,743
_02870
HUW76_02875: HUW76_02875 - fructose bisphosphate aldolase, at 590,141 to 591,028
_02875
HUW76_02880: HUW76_02880 - hypothetical protein, at 591,258 to 591,497
_02880
HUW76_02885: HUW76_02885 - zeta toxin family protein, at 591,501 to 592,397
_02885
Position (kb) 590
591
592 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 589.181 kb on + strand, within HUW76_02870 at 589.181 kb on + strand, within HUW76_02870 at 589.181 kb on + strand, within HUW76_02870 at 589.181 kb on + strand, within HUW76_02870 at 589.230 kb on + strand, within HUW76_02870 at 589.232 kb on + strand, within HUW76_02870 at 589.232 kb on + strand, within HUW76_02870 at 589.233 kb on - strand, within HUW76_02870 at 589.233 kb on - strand, within HUW76_02870 at 589.259 kb on + strand, within HUW76_02870 at 589.259 kb on + strand, within HUW76_02870 at 589.289 kb on + strand, within HUW76_02870 at 589.437 kb on - strand, within HUW76_02870 at 589.452 kb on + strand, within HUW76_02870 at 589.452 kb on + strand, within HUW76_02870 at 589.498 kb on + strand, within HUW76_02870 at 589.498 kb on + strand, within HUW76_02870 at 589.542 kb on + strand, within HUW76_02870 at 589.542 kb on + strand, within HUW76_02870 at 589.550 kb on - strand, within HUW76_02870 at 589.550 kb on - strand, within HUW76_02870 at 589.633 kb on - strand at 589.635 kb on - strand at 589.635 kb on - strand at 589.646 kb on + strand at 589.662 kb on - strand at 589.662 kb on - strand at 589.684 kb on + strand at 589.684 kb on + strand at 589.757 kb on + strand at 589.757 kb on + strand at 589.757 kb on + strand at 589.831 kb on - strand at 589.832 kb on + strand at 589.832 kb on + strand at 589.850 kb on + strand at 589.852 kb on - strand at 589.955 kb on + strand at 589.955 kb on + strand at 589.963 kb on - strand at 590.019 kb on - strand at 590.019 kb on - strand at 590.029 kb on - strand at 590.029 kb on - strand at 591.077 kb on - strand at 591.102 kb on + strand at 591.133 kb on + strand at 591.512 kb on + strand at 591.512 kb on + strand at 591.567 kb on + strand at 591.567 kb on + strand at 591.622 kb on + strand, within HUW76_02885 at 591.622 kb on + strand, within HUW76_02885 at 591.622 kb on + strand, within HUW76_02885 at 591.624 kb on + strand, within HUW76_02885 at 591.627 kb on + strand, within HUW76_02885 at 591.627 kb on + strand, within HUW76_02885 at 591.630 kb on - strand, within HUW76_02885 at 591.630 kb on - strand, within HUW76_02885 at 591.707 kb on - strand, within HUW76_02885 at 591.707 kb on - strand, within HUW76_02885 at 591.734 kb on + strand, within HUW76_02885 at 591.734 kb on + strand, within HUW76_02885 at 591.734 kb on + strand, within HUW76_02885 at 591.760 kb on - strand, within HUW76_02885 at 591.761 kb on - strand, within HUW76_02885 at 591.770 kb on - strand, within HUW76_02885 at 591.770 kb on - strand, within HUW76_02885 at 591.772 kb on - strand, within HUW76_02885 at 591.852 kb on + strand, within HUW76_02885 at 591.852 kb on + strand, within HUW76_02885 at 591.858 kb on - strand, within HUW76_02885 at 591.860 kb on - strand, within HUW76_02885 at 591.860 kb on - strand, within HUW76_02885 at 591.904 kb on - strand, within HUW76_02885 at 591.961 kb on + strand, within HUW76_02885 at 591.972 kb on + strand, within HUW76_02885 at 591.973 kb on + strand, within HUW76_02885
Per-strain Table
Position Strand Gene LocusTag Fraction RCM (C) remove 589,181 + HUW76_02870 0.69 +0.1 589,181 + HUW76_02870 0.69 +1.9 589,181 + HUW76_02870 0.69 -5.8 589,181 + HUW76_02870 0.69 -0.3 589,230 + HUW76_02870 0.72 -2.1 589,232 + HUW76_02870 0.72 +1.7 589,232 + HUW76_02870 0.72 -0.7 589,233 - HUW76_02870 0.72 +1.4 589,233 - HUW76_02870 0.72 -0.7 589,259 + HUW76_02870 0.73 +2.0 589,259 + HUW76_02870 0.73 +0.6 589,289 + HUW76_02870 0.75 +0.2 589,437 - HUW76_02870 0.83 -0.5 589,452 + HUW76_02870 0.84 -0.0 589,452 + HUW76_02870 0.84 -2.5 589,498 + HUW76_02870 0.87 +1.4 589,498 + HUW76_02870 0.87 -0.2 589,542 + HUW76_02870 0.89 -0.1 589,542 + HUW76_02870 0.89 -5.0 589,550 - HUW76_02870 0.89 +3.3 589,550 - HUW76_02870 0.89 +2.7 589,633 - +1.0 589,635 - -1.7 589,635 - -2.2 589,646 + +1.6 589,662 - +1.5 589,662 - +1.1 589,684 + +0.1 589,684 + -0.5 589,757 + -2.0 589,757 + -0.7 589,757 + -0.0 589,831 - -2.0 589,832 + -1.2 589,832 + -2.0 589,850 + -0.5 589,852 - +1.3 589,955 + -1.3 589,955 + -1.6 589,963 - +0.3 590,019 - -0.3 590,019 - -1.5 590,029 - +0.5 590,029 - -3.3 591,077 - -1.2 591,102 + -0.5 591,133 + -1.8 591,512 + -2.3 591,512 + -2.8 591,567 + +0.9 591,567 + -1.9 591,622 + HUW76_02885 0.13 -1.4 591,622 + HUW76_02885 0.13 +0.8 591,622 + HUW76_02885 0.13 -0.9 591,624 + HUW76_02885 0.14 -0.1 591,627 + HUW76_02885 0.14 -5.7 591,627 + HUW76_02885 0.14 -0.8 591,630 - HUW76_02885 0.14 -0.4 591,630 - HUW76_02885 0.14 +2.2 591,707 - HUW76_02885 0.23 -1.4 591,707 - HUW76_02885 0.23 -1.5 591,734 + HUW76_02885 0.26 -0.8 591,734 + HUW76_02885 0.26 -3.3 591,734 + HUW76_02885 0.26 -1.5 591,760 - HUW76_02885 0.29 -0.9 591,761 - HUW76_02885 0.29 -0.9 591,770 - HUW76_02885 0.30 +1.4 591,770 - HUW76_02885 0.30 +2.7 591,772 - HUW76_02885 0.30 +0.8 591,852 + HUW76_02885 0.39 +1.1 591,852 + HUW76_02885 0.39 -0.6 591,858 - HUW76_02885 0.40 +0.7 591,860 - HUW76_02885 0.40 -1.3 591,860 - HUW76_02885 0.40 -0.2 591,904 - HUW76_02885 0.45 +1.5 591,961 + HUW76_02885 0.51 +0.8 591,972 + HUW76_02885 0.53 -0.8 591,973 + HUW76_02885 0.53 +0.1
Or see this region's nucleotide sequence