Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01380

Experiment: RCM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01375 and HUW76_01380 overlap by 8 nucleotidesHUW76_01380 and HUW76_01385 are separated by 27 nucleotides HUW76_01375: HUW76_01375 - glycosyltransferase family 4 protein, at 269,029 to 270,270 _01375 HUW76_01380: HUW76_01380 - Gfo/Idh/MocA family oxidoreductase, at 270,263 to 271,339 _01380 HUW76_01385: HUW76_01385 - glycosyltransferase, at 271,367 to 272,461 _01385 Position (kb) 270 271 272Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 269.272 kb on + strand, within HUW76_01375at 269.280 kb on - strand, within HUW76_01375at 269.280 kb on - strand, within HUW76_01375at 269.322 kb on - strand, within HUW76_01375at 269.346 kb on + strand, within HUW76_01375at 269.346 kb on + strand, within HUW76_01375at 269.346 kb on + strand, within HUW76_01375at 269.346 kb on + strand, within HUW76_01375at 269.354 kb on - strand, within HUW76_01375at 269.384 kb on + strand, within HUW76_01375at 269.401 kb on + strand, within HUW76_01375at 269.401 kb on + strand, within HUW76_01375at 269.554 kb on + strand, within HUW76_01375at 269.567 kb on + strand, within HUW76_01375at 269.567 kb on + strand, within HUW76_01375at 269.602 kb on - strand, within HUW76_01375at 269.627 kb on - strand, within HUW76_01375at 269.639 kb on - strand, within HUW76_01375at 269.709 kb on + strand, within HUW76_01375at 269.709 kb on + strand, within HUW76_01375at 269.742 kb on + strand, within HUW76_01375at 269.742 kb on + strand, within HUW76_01375at 269.749 kb on + strand, within HUW76_01375at 269.757 kb on - strand, within HUW76_01375at 269.757 kb on - strand, within HUW76_01375at 269.867 kb on - strand, within HUW76_01375at 269.867 kb on - strand, within HUW76_01375at 269.880 kb on + strand, within HUW76_01375at 269.880 kb on + strand, within HUW76_01375at 269.946 kb on - strand, within HUW76_01375at 270.046 kb on + strand, within HUW76_01375at 270.143 kb on + strand, within HUW76_01375at 270.143 kb on + strand, within HUW76_01375at 270.278 kb on + strandat 270.278 kb on + strandat 270.278 kb on + strandat 270.286 kb on - strandat 270.286 kb on - strandat 270.286 kb on - strandat 270.358 kb on + strandat 270.568 kb on + strand, within HUW76_01380at 270.568 kb on + strand, within HUW76_01380at 270.608 kb on - strand, within HUW76_01380at 270.642 kb on - strand, within HUW76_01380at 270.765 kb on + strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.784 kb on - strand, within HUW76_01380at 270.866 kb on + strand, within HUW76_01380at 270.868 kb on + strand, within HUW76_01380at 270.868 kb on + strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.876 kb on - strand, within HUW76_01380at 270.891 kb on + strand, within HUW76_01380at 270.930 kb on - strand, within HUW76_01380at 270.943 kb on - strand, within HUW76_01380at 270.979 kb on - strand, within HUW76_01380at 270.979 kb on - strand, within HUW76_01380at 270.979 kb on - strand, within HUW76_01380at 271.013 kb on + strand, within HUW76_01380at 271.013 kb on + strand, within HUW76_01380at 271.072 kb on + strand, within HUW76_01380at 271.072 kb on + strand, within HUW76_01380at 271.088 kb on + strand, within HUW76_01380at 271.088 kb on + strand, within HUW76_01380at 271.099 kb on - strand, within HUW76_01380at 271.141 kb on - strand, within HUW76_01380at 271.143 kb on - strand, within HUW76_01380at 271.143 kb on - strand, within HUW76_01380at 271.158 kb on + strand, within HUW76_01380at 271.168 kb on - strand, within HUW76_01380at 271.347 kb on + strandat 271.347 kb on + strandat 271.349 kb on + strandat 271.390 kb on + strandat 271.407 kb on + strandat 271.407 kb on + strandat 271.474 kb on + strandat 271.474 kb on + strandat 271.510 kb on + strand, within HUW76_01385at 271.510 kb on + strand, within HUW76_01385at 271.510 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.511 kb on + strand, within HUW76_01385at 271.516 kb on + strand, within HUW76_01385at 271.516 kb on + strand, within HUW76_01385at 271.516 kb on + strand, within HUW76_01385at 271.643 kb on + strand, within HUW76_01385at 271.643 kb on + strand, within HUW76_01385at 271.688 kb on + strand, within HUW76_01385at 271.688 kb on + strand, within HUW76_01385at 271.725 kb on + strand, within HUW76_01385at 271.777 kb on + strand, within HUW76_01385at 271.839 kb on + strand, within HUW76_01385at 271.845 kb on + strand, within HUW76_01385at 271.900 kb on + strand, within HUW76_01385at 271.933 kb on + strand, within HUW76_01385at 272.048 kb on + strand, within HUW76_01385at 272.048 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385at 272.198 kb on + strand, within HUW76_01385

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM (C)
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269,272 + HUW76_01375 0.20 -1.5
269,280 - HUW76_01375 0.20 -2.6
269,280 - HUW76_01375 0.20 -2.9
269,322 - HUW76_01375 0.24 -2.3
269,346 + HUW76_01375 0.26 -4.4
269,346 + HUW76_01375 0.26 -2.3
269,346 + HUW76_01375 0.26 -3.8
269,346 + HUW76_01375 0.26 +1.6
269,354 - HUW76_01375 0.26 -3.5
269,384 + HUW76_01375 0.29 -2.7
269,401 + HUW76_01375 0.30 -0.7
269,401 + HUW76_01375 0.30 -3.0
269,554 + HUW76_01375 0.42 -3.6
269,567 + HUW76_01375 0.43 -3.6
269,567 + HUW76_01375 0.43 -1.7
269,602 - HUW76_01375 0.46 -1.4
269,627 - HUW76_01375 0.48 -2.0
269,639 - HUW76_01375 0.49 -0.4
269,709 + HUW76_01375 0.55 -3.3
269,709 + HUW76_01375 0.55 -2.7
269,742 + HUW76_01375 0.57 +1.6
269,742 + HUW76_01375 0.57 -3.5
269,749 + HUW76_01375 0.58 -2.3
269,757 - HUW76_01375 0.59 -2.9
269,757 - HUW76_01375 0.59 -1.2
269,867 - HUW76_01375 0.67 -1.2
269,867 - HUW76_01375 0.67 -3.1
269,880 + HUW76_01375 0.69 -2.5
269,880 + HUW76_01375 0.69 -1.4
269,946 - HUW76_01375 0.74 -1.4
270,046 + HUW76_01375 0.82 -4.2
270,143 + HUW76_01375 0.90 -3.1
270,143 + HUW76_01375 0.90 -3.4
270,278 + -5.6
270,278 + -2.9
270,278 + -3.6
270,286 - -1.4
270,286 - -3.2
270,286 - +0.6
270,358 + -5.4
270,568 + HUW76_01380 0.28 -5.2
270,568 + HUW76_01380 0.28 -5.3
270,608 - HUW76_01380 0.32 +0.0
270,642 - HUW76_01380 0.35 -2.0
270,765 + HUW76_01380 0.47 -4.5
270,784 - HUW76_01380 0.48 -0.4
270,784 - HUW76_01380 0.48 -1.4
270,784 - HUW76_01380 0.48 -2.0
270,784 - HUW76_01380 0.48 -0.2
270,866 + HUW76_01380 0.56 -4.2
270,868 + HUW76_01380 0.56 -3.7
270,868 + HUW76_01380 0.56 -3.7
270,876 - HUW76_01380 0.57 -1.6
270,876 - HUW76_01380 0.57 -2.0
270,876 - HUW76_01380 0.57 -2.3
270,876 - HUW76_01380 0.57 -1.7
270,891 + HUW76_01380 0.58 -2.4
270,930 - HUW76_01380 0.62 -0.7
270,943 - HUW76_01380 0.63 -1.7
270,979 - HUW76_01380 0.66 +0.6
270,979 - HUW76_01380 0.66 -1.2
270,979 - HUW76_01380 0.66 -2.2
271,013 + HUW76_01380 0.70 -2.2
271,013 + HUW76_01380 0.70 -4.3
271,072 + HUW76_01380 0.75 -4.3
271,072 + HUW76_01380 0.75 -3.0
271,088 + HUW76_01380 0.77 -4.7
271,088 + HUW76_01380 0.77 -3.9
271,099 - HUW76_01380 0.78 -0.4
271,141 - HUW76_01380 0.82 -0.4
271,143 - HUW76_01380 0.82 -2.0
271,143 - HUW76_01380 0.82 -3.3
271,158 + HUW76_01380 0.83 -2.1
271,168 - HUW76_01380 0.84 -3.7
271,347 + -1.8
271,347 + -0.9
271,349 + -1.5
271,390 + -1.7
271,407 + -2.8
271,407 + -3.9
271,474 + -4.3
271,474 + +1.6
271,510 + HUW76_01385 0.13 -5.2
271,510 + HUW76_01385 0.13 -1.0
271,510 + HUW76_01385 0.13 -4.8
271,511 + HUW76_01385 0.13 -4.2
271,511 + HUW76_01385 0.13 -4.1
271,511 + HUW76_01385 0.13 -4.2
271,511 + HUW76_01385 0.13 -4.4
271,511 + HUW76_01385 0.13 -0.7
271,516 + HUW76_01385 0.14 -2.8
271,516 + HUW76_01385 0.14 -4.6
271,516 + HUW76_01385 0.14 -2.6
271,643 + HUW76_01385 0.25 -2.5
271,643 + HUW76_01385 0.25 -4.4
271,688 + HUW76_01385 0.29 -1.4
271,688 + HUW76_01385 0.29 -2.4
271,725 + HUW76_01385 0.33 -1.9
271,777 + HUW76_01385 0.37 -5.0
271,839 + HUW76_01385 0.43 -3.3
271,845 + HUW76_01385 0.44 -4.7
271,900 + HUW76_01385 0.49 -4.8
271,933 + HUW76_01385 0.52 -5.2
272,048 + HUW76_01385 0.62 -3.8
272,048 + HUW76_01385 0.62 -0.0
272,198 + HUW76_01385 0.76 -2.2
272,198 + HUW76_01385 0.76 -4.7
272,198 + HUW76_01385 0.76 -4.2
272,198 + HUW76_01385 0.76 +3.7

Or see this region's nucleotide sequence