Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_28750 and insE are separated by 188 nucleotides insE and NIAGMN_28760 overlap by 74 nucleotides NIAGMN_28760 and toxB are separated by 91 nucleotides
NIAGMN_28750: NIAGMN_28750 - TraI domain-containing protein, at 51,439 to 52,695
_28750
NIAGMN_28755: insE - Transposase InsE and inactivated derivatives, at 52,884 to 53,387
insE
NIAGMN_28760: NIAGMN_28760 - Transposase Tra5, at 53,314 to 53,586
_28760
NIAGMN_28765: toxB - toxin B, at 53,678 to 63,187
toxB
Position (kb) 53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 52.373 kb on + strand, within NIAGMN_28750 at 52.374 kb on - strand, within NIAGMN_28750 at 52.374 kb on - strand, within NIAGMN_28750 at 52.374 kb on - strand, within NIAGMN_28750 at 52.396 kb on - strand, within NIAGMN_28750 at 52.396 kb on - strand, within NIAGMN_28750 at 52.412 kb on + strand, within NIAGMN_28750 at 52.412 kb on + strand, within NIAGMN_28750 at 52.412 kb on + strand, within NIAGMN_28750 at 52.413 kb on - strand, within NIAGMN_28750 at 52.413 kb on - strand, within NIAGMN_28750 at 52.456 kb on - strand, within NIAGMN_28750 at 52.518 kb on - strand, within NIAGMN_28750 at 52.518 kb on - strand, within NIAGMN_28750 at 52.518 kb on - strand, within NIAGMN_28750 at 52.530 kb on + strand, within NIAGMN_28750 at 52.530 kb on + strand, within NIAGMN_28750 at 52.530 kb on + strand, within NIAGMN_28750 at 52.530 kb on + strand, within NIAGMN_28750 at 52.531 kb on - strand, within NIAGMN_28750 at 52.531 kb on - strand, within NIAGMN_28750 at 52.643 kb on + strand at 52.643 kb on + strand at 52.643 kb on + strand at 52.643 kb on + strand at 52.643 kb on + strand at 52.644 kb on - strand at 52.644 kb on - strand at 52.644 kb on - strand at 52.767 kb on + strand at 52.789 kb on + strand at 52.813 kb on - strand at 53.152 kb on + strand, within insE at 53.185 kb on + strand, within insE at 53.186 kb on - strand, within insE at 53.186 kb on - strand, within insE at 53.186 kb on - strand, within insE at 53.186 kb on - strand, within insE at 53.186 kb on - strand, within insE at 53.269 kb on + strand, within insE at 53.270 kb on - strand, within insE at 53.308 kb on - strand, within insE at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.603 kb on + strand at 53.604 kb on - strand at 53.604 kb on - strand at 53.604 kb on - strand at 53.604 kb on - strand at 53.604 kb on - strand at 53.604 kb on - strand at 53.640 kb on - strand at 53.645 kb on + strand at 53.646 kb on - strand at 53.679 kb on + strand at 53.705 kb on - strand at 53.705 kb on - strand at 53.721 kb on - strand at 53.721 kb on - strand at 53.721 kb on - strand at 53.723 kb on - strand at 53.723 kb on - strand at 53.748 kb on - strand at 53.748 kb on - strand at 54.056 kb on - strand at 54.059 kb on + strand at 54.059 kb on + strand at 54.062 kb on - strand at 54.062 kb on - strand at 54.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 52,373 + NIAGMN_28750 0.74 -0.7 52,374 - NIAGMN_28750 0.74 -0.4 52,374 - NIAGMN_28750 0.74 +0.1 52,374 - NIAGMN_28750 0.74 +0.7 52,396 - NIAGMN_28750 0.76 +0.7 52,396 - NIAGMN_28750 0.76 +0.6 52,412 + NIAGMN_28750 0.77 -1.9 52,412 + NIAGMN_28750 0.77 +2.3 52,412 + NIAGMN_28750 0.77 +2.1 52,413 - NIAGMN_28750 0.77 +0.0 52,413 - NIAGMN_28750 0.77 -0.5 52,456 - NIAGMN_28750 0.81 +0.3 52,518 - NIAGMN_28750 0.86 -0.0 52,518 - NIAGMN_28750 0.86 -0.7 52,518 - NIAGMN_28750 0.86 +0.6 52,530 + NIAGMN_28750 0.87 +0.3 52,530 + NIAGMN_28750 0.87 -0.3 52,530 + NIAGMN_28750 0.87 +0.3 52,530 + NIAGMN_28750 0.87 -0.4 52,531 - NIAGMN_28750 0.87 -1.3 52,531 - NIAGMN_28750 0.87 +0.7 52,643 + +0.5 52,643 + +0.8 52,643 + -0.5 52,643 + -1.6 52,643 + -0.4 52,644 - -0.4 52,644 - -0.3 52,644 - -0.9 52,767 + -0.3 52,789 + +0.0 52,813 - -0.4 53,152 + insE NIAGMN_28755 0.53 -0.3 53,185 + insE NIAGMN_28755 0.60 -0.7 53,186 - insE NIAGMN_28755 0.60 +0.8 53,186 - insE NIAGMN_28755 0.60 -0.9 53,186 - insE NIAGMN_28755 0.60 +0.6 53,186 - insE NIAGMN_28755 0.60 +0.3 53,186 - insE NIAGMN_28755 0.60 +1.6 53,269 + insE NIAGMN_28755 0.76 +0.0 53,270 - insE NIAGMN_28755 0.77 +2.2 53,308 - insE NIAGMN_28755 0.84 -0.5 53,382 - -1.1 53,382 - -2.7 53,382 - -0.1 53,382 - -0.9 53,382 - -2.9 53,382 - +0.8 53,382 - +0.6 53,382 - -2.3 53,382 - +0.3 53,382 - +2.3 53,603 + -2.4 53,604 - -0.7 53,604 - +1.2 53,604 - +1.2 53,604 - -1.7 53,604 - +1.2 53,604 - -0.6 53,640 - +0.1 53,645 + +0.5 53,646 - -0.9 53,679 + -2.3 53,705 - -0.5 53,705 - +0.9 53,721 - +1.2 53,721 - -1.6 53,721 - +0.6 53,723 - +0.4 53,723 - -0.9 53,748 - +0.7 53,748 - +1.0 54,056 - +0.1 54,059 + -2.3 54,059 + -0.3 54,062 - -0.8 54,062 - -1.2 54,287 - +1.5
Or see this region's nucleotide sequence