Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt repA2 and NIAGMN_28710 are separated by 239 nucleotides NIAGMN_28710 and NIAGMN_28715 are separated by 37 nucleotides NIAGMN_28715 and yncB are separated by 45 nucleotides yncB and NIAGMN_28730 are separated by 201 nucleotides NIAGMN_28730 and finO are separated by 136 nucleotides
NIAGMN_28705: repA2 - Replication regulatory protein repA2, at 46,915 to 47,169
repA2
NIAGMN_28710: NIAGMN_28710 - W0003, at 47,409 to 47,747
_28710
NIAGMN_28715: NIAGMN_28715 - transcriptional regulator, at 47,785 to 47,994
_28715
NIAGMN_28720: yncB - Uncharacterized endonuclease, at 48,040 to 48,501
yncB
NIAGMN_28730: NIAGMN_28730 - hypothetical protein, at 48,703 to 48,954
_28730
NIAGMN_28735: finO - Fertility inhibition protein, at 49,091 to 49,651
finO
Position (kb) 48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 47.062 kb on - strand, within repA2 at 47.062 kb on - strand, within repA2 at 47.117 kb on + strand, within repA2 at 47.118 kb on - strand, within repA2 at 47.118 kb on - strand, within repA2 at 47.118 kb on - strand, within repA2 at 47.183 kb on + strand at 47.187 kb on + strand at 47.187 kb on + strand at 47.187 kb on + strand at 47.188 kb on - strand at 47.188 kb on - strand at 47.188 kb on - strand at 47.213 kb on - strand at 47.213 kb on - strand at 47.213 kb on - strand at 47.215 kb on + strand at 47.216 kb on - strand at 47.287 kb on - strand at 47.287 kb on - strand at 47.297 kb on - strand at 47.306 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.318 kb on + strand at 47.319 kb on - strand at 47.319 kb on - strand at 47.321 kb on + strand at 47.322 kb on - strand at 47.334 kb on + strand at 47.335 kb on - strand at 47.414 kb on + strand at 47.415 kb on - strand at 47.415 kb on - strand at 47.415 kb on - strand at 47.415 kb on - strand at 47.450 kb on + strand, within NIAGMN_28710 at 47.450 kb on + strand, within NIAGMN_28710 at 47.547 kb on - strand, within NIAGMN_28710 at 47.572 kb on - strand, within NIAGMN_28710 at 47.572 kb on - strand, within NIAGMN_28710 at 47.587 kb on + strand, within NIAGMN_28710 at 47.588 kb on - strand, within NIAGMN_28710 at 47.604 kb on + strand, within NIAGMN_28710 at 47.605 kb on - strand, within NIAGMN_28710 at 47.605 kb on - strand, within NIAGMN_28710 at 47.629 kb on - strand, within NIAGMN_28710 at 47.629 kb on - strand, within NIAGMN_28710 at 47.629 kb on - strand, within NIAGMN_28710 at 47.673 kb on + strand, within NIAGMN_28710 at 47.770 kb on - strand at 47.960 kb on - strand, within NIAGMN_28715 at 48.045 kb on + strand at 48.152 kb on + strand, within yncB at 48.153 kb on - strand, within yncB at 48.161 kb on + strand, within yncB at 48.161 kb on + strand, within yncB at 48.162 kb on - strand, within yncB at 48.163 kb on + strand, within yncB at 48.164 kb on - strand, within yncB at 48.164 kb on - strand, within yncB at 48.190 kb on - strand, within yncB at 48.237 kb on + strand, within yncB at 48.238 kb on - strand, within yncB at 48.246 kb on - strand, within yncB at 48.326 kb on + strand, within yncB at 48.355 kb on - strand, within yncB at 48.406 kb on - strand, within yncB at 48.418 kb on + strand, within yncB at 48.660 kb on - strand at 48.678 kb on - strand at 48.701 kb on - strand at 48.989 kb on + strand at 48.990 kb on - strand at 48.990 kb on - strand at 48.997 kb on + strand at 48.998 kb on - strand at 49.001 kb on + strand at 49.002 kb on - strand at 49.002 kb on - strand at 49.038 kb on + strand at 49.049 kb on - strand at 49.056 kb on - strand at 49.170 kb on + strand, within finO at 49.171 kb on - strand, within finO at 49.171 kb on - strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.207 kb on - strand, within finO at 49.207 kb on - strand, within finO at 49.254 kb on + strand, within finO at 49.254 kb on + strand, within finO at 49.254 kb on + strand, within finO at 49.255 kb on - strand, within finO at 49.255 kb on - strand, within finO at 49.255 kb on - strand, within finO at 49.255 kb on - strand, within finO at 49.391 kb on + strand, within finO at 49.392 kb on - strand, within finO at 49.452 kb on + strand, within finO at 49.452 kb on + strand, within finO at 49.452 kb on + strand, within finO at 49.453 kb on - strand, within finO at 49.453 kb on - strand, within finO
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 47,062 - repA2 NIAGMN_28705 0.58 -0.5 47,062 - repA2 NIAGMN_28705 0.58 -3.7 47,117 + repA2 NIAGMN_28705 0.79 -0.3 47,118 - repA2 NIAGMN_28705 0.80 +0.5 47,118 - repA2 NIAGMN_28705 0.80 -1.9 47,118 - repA2 NIAGMN_28705 0.80 +0.7 47,183 + -2.1 47,187 + +0.8 47,187 + -2.0 47,187 + -1.2 47,188 - +1.2 47,188 - +2.1 47,188 - +3.0 47,213 - +1.9 47,213 - -0.5 47,213 - -0.4 47,215 + -1.4 47,216 - -0.3 47,287 - -0.1 47,287 - -0.5 47,297 - -0.1 47,306 + +1.6 47,318 + +1.5 47,318 + +1.1 47,318 + -0.3 47,318 + +0.2 47,318 + -1.0 47,318 + +1.8 47,318 + +0.3 47,319 - +0.3 47,319 - -2.1 47,321 + -0.0 47,322 - +0.2 47,334 + +1.5 47,335 - +0.6 47,414 + +0.3 47,415 - -0.0 47,415 - +0.1 47,415 - -1.0 47,415 - +0.2 47,450 + NIAGMN_28710 0.12 +2.5 47,450 + NIAGMN_28710 0.12 -0.5 47,547 - NIAGMN_28710 0.41 -0.3 47,572 - NIAGMN_28710 0.48 -0.2 47,572 - NIAGMN_28710 0.48 -0.7 47,587 + NIAGMN_28710 0.53 +2.1 47,588 - NIAGMN_28710 0.53 +1.6 47,604 + NIAGMN_28710 0.58 +1.2 47,605 - NIAGMN_28710 0.58 +1.0 47,605 - NIAGMN_28710 0.58 -0.1 47,629 - NIAGMN_28710 0.65 -0.0 47,629 - NIAGMN_28710 0.65 -2.5 47,629 - NIAGMN_28710 0.65 +0.1 47,673 + NIAGMN_28710 0.78 +3.3 47,770 - +0.7 47,960 - NIAGMN_28715 0.83 -2.4 48,045 + +0.7 48,152 + yncB NIAGMN_28720 0.24 +2.5 48,153 - yncB NIAGMN_28720 0.24 +0.1 48,161 + yncB NIAGMN_28720 0.26 +0.9 48,161 + yncB NIAGMN_28720 0.26 +1.0 48,162 - yncB NIAGMN_28720 0.26 +3.1 48,163 + yncB NIAGMN_28720 0.27 +1.7 48,164 - yncB NIAGMN_28720 0.27 -0.7 48,164 - yncB NIAGMN_28720 0.27 +1.1 48,190 - yncB NIAGMN_28720 0.32 -0.1 48,237 + yncB NIAGMN_28720 0.43 -0.5 48,238 - yncB NIAGMN_28720 0.43 -0.3 48,246 - yncB NIAGMN_28720 0.45 -0.7 48,326 + yncB NIAGMN_28720 0.62 -1.3 48,355 - yncB NIAGMN_28720 0.68 -2.4 48,406 - yncB NIAGMN_28720 0.79 -0.2 48,418 + yncB NIAGMN_28720 0.82 +1.3 48,660 - -0.1 48,678 - +0.4 48,701 - -1.2 48,989 + -0.7 48,990 - +0.5 48,990 - +2.3 48,997 + +0.0 48,998 - -1.5 49,001 + +1.4 49,002 - -0.4 49,002 - -1.2 49,038 + -2.8 49,049 - -1.7 49,056 - -0.3 49,170 + finO NIAGMN_28735 0.14 +0.3 49,171 - finO NIAGMN_28735 0.14 +1.9 49,171 - finO NIAGMN_28735 0.14 +0.1 49,192 + finO NIAGMN_28735 0.18 -0.0 49,192 + finO NIAGMN_28735 0.18 +0.9 49,192 + finO NIAGMN_28735 0.18 +0.4 49,192 + finO NIAGMN_28735 0.18 +0.1 49,192 + finO NIAGMN_28735 0.18 -1.5 49,193 - finO NIAGMN_28735 0.18 -1.2 49,193 - finO NIAGMN_28735 0.18 -1.8 49,193 - finO NIAGMN_28735 0.18 +3.5 49,193 - finO NIAGMN_28735 0.18 +1.2 49,193 - finO NIAGMN_28735 0.18 -0.2 49,206 + finO NIAGMN_28735 0.20 -0.4 49,206 + finO NIAGMN_28735 0.20 -1.2 49,206 + finO NIAGMN_28735 0.20 +2.3 49,206 + finO NIAGMN_28735 0.20 -0.6 49,206 + finO NIAGMN_28735 0.20 -0.3 49,206 + finO NIAGMN_28735 0.20 -0.2 49,206 + finO NIAGMN_28735 0.20 -0.4 49,207 - finO NIAGMN_28735 0.21 -0.8 49,207 - finO NIAGMN_28735 0.21 -0.3 49,254 + finO NIAGMN_28735 0.29 +1.1 49,254 + finO NIAGMN_28735 0.29 -2.9 49,254 + finO NIAGMN_28735 0.29 +2.6 49,255 - finO NIAGMN_28735 0.29 -0.8 49,255 - finO NIAGMN_28735 0.29 -0.3 49,255 - finO NIAGMN_28735 0.29 +1.0 49,255 - finO NIAGMN_28735 0.29 +0.5 49,391 + finO NIAGMN_28735 0.53 +0.6 49,392 - finO NIAGMN_28735 0.54 +0.7 49,452 + finO NIAGMN_28735 0.64 +1.1 49,452 + finO NIAGMN_28735 0.64 -1.6 49,452 + finO NIAGMN_28735 0.64 +1.0 49,453 - finO NIAGMN_28735 0.65 -3.1 49,453 - finO NIAGMN_28735 0.65 +0.2
Or see this region's nucleotide sequence