Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28660

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_28655 and NIAGMN_28660 are separated by 157 nucleotidesNIAGMN_28660 and katP are separated by 43 nucleotides NIAGMN_28655: NIAGMN_28655 - IS3 family transposase, at 38,592 to 39,479 _28655 NIAGMN_28660: NIAGMN_28660 - cytochrome b562 family protein, at 39,637 to 40,026 _28660 NIAGMN_28665: katP - catalase/peroxidase KatP, at 40,070 to 42,280 katP Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2 3at 39.584 kb on + strandat 39.590 kb on + strandat 39.591 kb on - strandat 39.591 kb on - strandat 39.603 kb on + strandat 39.604 kb on - strandat 39.604 kb on - strandat 39.604 kb on - strandat 39.604 kb on - strandat 39.608 kb on - strandat 39.649 kb on - strandat 39.700 kb on - strand, within NIAGMN_28660at 39.700 kb on - strand, within NIAGMN_28660at 39.742 kb on - strand, within NIAGMN_28660at 39.742 kb on - strand, within NIAGMN_28660at 39.772 kb on + strand, within NIAGMN_28660at 39.773 kb on - strand, within NIAGMN_28660at 39.773 kb on - strand, within NIAGMN_28660at 39.773 kb on - strand, within NIAGMN_28660at 39.775 kb on - strand, within NIAGMN_28660at 39.777 kb on - strand, within NIAGMN_28660at 39.842 kb on - strand, within NIAGMN_28660at 39.842 kb on - strand, within NIAGMN_28660at 39.842 kb on - strand, within NIAGMN_28660at 39.885 kb on + strand, within NIAGMN_28660at 39.912 kb on + strand, within NIAGMN_28660at 39.960 kb on + strand, within NIAGMN_28660at 39.960 kb on + strand, within NIAGMN_28660at 39.961 kb on - strand, within NIAGMN_28660at 39.982 kb on + strand, within NIAGMN_28660at 39.983 kb on - strand, within NIAGMN_28660at 39.983 kb on - strand, within NIAGMN_28660at 39.991 kb on - strandat 39.991 kb on - strandat 40.005 kb on + strandat 40.005 kb on + strandat 40.011 kb on + strandat 40.112 kb on - strandat 40.169 kb on + strandat 40.188 kb on - strandat 40.269 kb on + strandat 40.270 kb on - strandat 40.270 kb on - strandat 40.273 kb on + strandat 40.274 kb on - strandat 40.292 kb on - strand, within katPat 40.387 kb on + strand, within katPat 40.462 kb on + strand, within katPat 40.488 kb on - strand, within katPat 40.488 kb on - strand, within katPat 40.488 kb on - strand, within katPat 40.488 kb on - strand, within katPat 40.490 kb on - strand, within katPat 40.513 kb on - strand, within katPat 40.513 kb on - strand, within katPat 40.544 kb on + strand, within katPat 40.544 kb on + strand, within katPat 40.730 kb on + strand, within katPat 40.751 kb on + strand, within katPat 40.778 kb on - strand, within katPat 40.789 kb on + strand, within katPat 40.822 kb on + strand, within katPat 40.822 kb on + strand, within katPat 40.881 kb on - strand, within katPat 40.881 kb on - strand, within katPat 40.934 kb on - strand, within katPat 40.957 kb on + strand, within katPat 40.957 kb on + strand, within katPat 40.957 kb on + strand, within katPat 40.958 kb on - strand, within katPat 40.958 kb on - strand, within katPat 40.959 kb on + strand, within katPat 40.990 kb on + strand, within katPat 40.990 kb on + strand, within katPat 40.991 kb on - strand, within katPat 41.015 kb on - strand, within katPat 41.015 kb on - strand, within katPat 41.022 kb on + strand, within katP

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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39,584 + -1.5
39,590 + -2.2
39,591 - -0.3
39,591 - -1.4
39,603 + +0.1
39,604 - +0.2
39,604 - +0.2
39,604 - -0.3
39,604 - -0.2
39,608 - +0.5
39,649 - -0.0
39,700 - NIAGMN_28660 0.16 +1.4
39,700 - NIAGMN_28660 0.16 -1.3
39,742 - NIAGMN_28660 0.27 -0.3
39,742 - NIAGMN_28660 0.27 +0.4
39,772 + NIAGMN_28660 0.35 +1.9
39,773 - NIAGMN_28660 0.35 +0.9
39,773 - NIAGMN_28660 0.35 -2.1
39,773 - NIAGMN_28660 0.35 +0.0
39,775 - NIAGMN_28660 0.35 +0.1
39,777 - NIAGMN_28660 0.36 -1.7
39,842 - NIAGMN_28660 0.53 -0.7
39,842 - NIAGMN_28660 0.53 +0.1
39,842 - NIAGMN_28660 0.53 -0.1
39,885 + NIAGMN_28660 0.64 +3.0
39,912 + NIAGMN_28660 0.71 +0.5
39,960 + NIAGMN_28660 0.83 -0.9
39,960 + NIAGMN_28660 0.83 -0.7
39,961 - NIAGMN_28660 0.83 +2.4
39,982 + NIAGMN_28660 0.88 +1.8
39,983 - NIAGMN_28660 0.89 +0.2
39,983 - NIAGMN_28660 0.89 -1.1
39,991 - +0.1
39,991 - -0.3
40,005 + +1.3
40,005 + +0.2
40,011 + +0.7
40,112 - +1.1
40,169 + +0.4
40,188 - +2.2
40,269 + +0.9
40,270 - -0.1
40,270 - -1.3
40,273 + -1.4
40,274 - +2.2
40,292 - katP NIAGMN_28665 0.10 +0.9
40,387 + katP NIAGMN_28665 0.14 +2.7
40,462 + katP NIAGMN_28665 0.18 +0.2
40,488 - katP NIAGMN_28665 0.19 -0.1
40,488 - katP NIAGMN_28665 0.19 -1.5
40,488 - katP NIAGMN_28665 0.19 -1.4
40,488 - katP NIAGMN_28665 0.19 +1.0
40,490 - katP NIAGMN_28665 0.19 -0.5
40,513 - katP NIAGMN_28665 0.20 -0.5
40,513 - katP NIAGMN_28665 0.20 -1.9
40,544 + katP NIAGMN_28665 0.21 -2.3
40,544 + katP NIAGMN_28665 0.21 +1.3
40,730 + katP NIAGMN_28665 0.30 +0.0
40,751 + katP NIAGMN_28665 0.31 -0.1
40,778 - katP NIAGMN_28665 0.32 -0.7
40,789 + katP NIAGMN_28665 0.33 +0.7
40,822 + katP NIAGMN_28665 0.34 -0.5
40,822 + katP NIAGMN_28665 0.34 -2.6
40,881 - katP NIAGMN_28665 0.37 -1.8
40,881 - katP NIAGMN_28665 0.37 -0.3
40,934 - katP NIAGMN_28665 0.39 +0.9
40,957 + katP NIAGMN_28665 0.40 +1.9
40,957 + katP NIAGMN_28665 0.40 +0.5
40,957 + katP NIAGMN_28665 0.40 -0.5
40,958 - katP NIAGMN_28665 0.40 +0.6
40,958 - katP NIAGMN_28665 0.40 +0.5
40,959 + katP NIAGMN_28665 0.40 +0.7
40,990 + katP NIAGMN_28665 0.42 +0.0
40,990 + katP NIAGMN_28665 0.42 +0.5
40,991 - katP NIAGMN_28665 0.42 +2.0
41,015 - katP NIAGMN_28665 0.43 -0.1
41,015 - katP NIAGMN_28665 0.43 +0.9
41,022 + katP NIAGMN_28665 0.43 -0.7

Or see this region's nucleotide sequence