Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28095

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcotJC and gpA1 are separated by 119 nucleotidesgpA1 and NIAGMN_28105 overlap by 1 nucleotides NIAGMN_28090: cotJC - Mn-containing catalase, at 5,439,769 to 5,440,659 cotJC NIAGMN_28095: gpA1 - phage tail protein, at 5,440,779 to 5,441,360 gpA1 NIAGMN_28105: NIAGMN_28105 - Prophage tail fibre N-terminal, at 5,441,360 to 5,444,275 _28105 Position (kb) 5440 5441 5442Strain fitness (log2 ratio) -2 -1 0 1 2at 5439.798 kb on + strandat 5439.809 kb on + strandat 5439.909 kb on - strand, within cotJCat 5439.951 kb on - strand, within cotJCat 5439.951 kb on - strand, within cotJCat 5440.096 kb on - strand, within cotJCat 5440.098 kb on - strand, within cotJCat 5440.165 kb on + strand, within cotJCat 5440.177 kb on - strand, within cotJCat 5440.177 kb on - strand, within cotJCat 5440.177 kb on - strand, within cotJCat 5440.299 kb on - strand, within cotJCat 5440.411 kb on + strand, within cotJCat 5440.650 kb on + strandat 5440.675 kb on + strandat 5440.909 kb on - strand, within gpA1at 5440.932 kb on - strand, within gpA1at 5440.932 kb on - strand, within gpA1at 5441.361 kb on + strandat 5441.595 kb on - strandat 5441.651 kb on - strandat 5442.023 kb on - strand, within NIAGMN_28105at 5442.089 kb on - strand, within NIAGMN_28105at 5442.116 kb on - strand, within NIAGMN_28105at 5442.135 kb on - strand, within NIAGMN_28105at 5442.170 kb on - strand, within NIAGMN_28105at 5442.191 kb on - strand, within NIAGMN_28105at 5442.293 kb on + strand, within NIAGMN_28105

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,439,798 + -0.7
5,439,809 + +1.3
5,439,909 - cotJC NIAGMN_28090 0.16 +0.0
5,439,951 - cotJC NIAGMN_28090 0.20 +0.2
5,439,951 - cotJC NIAGMN_28090 0.20 -1.3
5,440,096 - cotJC NIAGMN_28090 0.37 -0.8
5,440,098 - cotJC NIAGMN_28090 0.37 -0.7
5,440,165 + cotJC NIAGMN_28090 0.44 +2.3
5,440,177 - cotJC NIAGMN_28090 0.46 +2.4
5,440,177 - cotJC NIAGMN_28090 0.46 +2.4
5,440,177 - cotJC NIAGMN_28090 0.46 -2.1
5,440,299 - cotJC NIAGMN_28090 0.59 +0.5
5,440,411 + cotJC NIAGMN_28090 0.72 +0.5
5,440,650 + -0.7
5,440,675 + -0.7
5,440,909 - gpA1 NIAGMN_28095 0.22 -0.2
5,440,932 - gpA1 NIAGMN_28095 0.26 +0.5
5,440,932 - gpA1 NIAGMN_28095 0.26 +2.4
5,441,361 + -1.3
5,441,595 - -0.2
5,441,651 - +0.7
5,442,023 - NIAGMN_28105 0.23 -0.3
5,442,089 - NIAGMN_28105 0.25 -1.5
5,442,116 - NIAGMN_28105 0.26 +1.4
5,442,135 - NIAGMN_28105 0.27 +0.5
5,442,170 - NIAGMN_28105 0.28 +0.5
5,442,191 - NIAGMN_28105 0.28 +0.0
5,442,293 + NIAGMN_28105 0.32 -0.9

Or see this region's nucleotide sequence