Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27875

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfepD and fepC overlap by 4 nucleotidesfepC and NIAGMN_27875 are separated by 9 nucleotidesNIAGMN_27875 and modD are separated by 164 nucleotides NIAGMN_27865: fepD - iron ABC transporter permease, at 5,400,513 to 5,401,493 fepD NIAGMN_27870: fepC - ABC transporter ATP-binding protein, at 5,401,490 to 5,402,248 fepC NIAGMN_27875: NIAGMN_27875 - SAM-dependent methyltransferase, at 5,402,258 to 5,402,902 _27875 NIAGMN_27880: modD - Putative pyrophosphorylase ModD, at 5,403,067 to 5,403,921 modD Position (kb) 5402 5403Strain fitness (log2 ratio) -2 -1 0 1at 5401.657 kb on - strand, within fepCat 5402.023 kb on - strand, within fepCat 5402.067 kb on + strand, within fepCat 5402.807 kb on + strand, within NIAGMN_27875at 5402.808 kb on - strand, within NIAGMN_27875at 5402.944 kb on + strandat 5402.969 kb on + strandat 5403.114 kb on + strandat 5403.237 kb on + strand, within modDat 5403.546 kb on - strand, within modDat 5403.702 kb on - strand, within modDat 5403.849 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
5,401,657 - fepC NIAGMN_27870 0.22 -1.4
5,402,023 - fepC NIAGMN_27870 0.70 -2.3
5,402,067 + fepC NIAGMN_27870 0.76 +0.3
5,402,807 + NIAGMN_27875 0.85 -0.1
5,402,808 - NIAGMN_27875 0.85 +0.3
5,402,944 + -0.4
5,402,969 + -0.3
5,403,114 + +1.7
5,403,237 + modD NIAGMN_27880 0.20 -0.1
5,403,546 - modD NIAGMN_27880 0.56 +0.1
5,403,702 - modD NIAGMN_27880 0.74 +1.3
5,403,849 + +1.5

Or see this region's nucleotide sequence