Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27580

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntclsA and cls are separated by 34 nucleotidescls and oppF are separated by 52 nucleotides NIAGMN_27575: clsA - cardiolipin synthase ClsA, at 5,342,301 to 5,343,761 clsA NIAGMN_27580: cls - cardiolipin synthase, at 5,343,796 to 5,344,125 cls NIAGMN_27585: oppF - murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF, at 5,344,178 to 5,345,182 oppF Position (kb) 5343 5344 5345Strain fitness (log2 ratio) -1 0 1 2at 5343.188 kb on + strand, within clsAat 5343.189 kb on - strand, within clsAat 5343.660 kb on - strandat 5344.405 kb on - strand, within oppFat 5344.437 kb on + strand, within oppFat 5344.438 kb on - strand, within oppFat 5344.468 kb on - strand, within oppFat 5344.468 kb on - strand, within oppFat 5344.530 kb on - strand, within oppFat 5344.796 kb on - strand, within oppF

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,343,188 + clsA NIAGMN_27575 0.61 +2.5
5,343,189 - clsA NIAGMN_27575 0.61 -0.5
5,343,660 - +0.5
5,344,405 - oppF NIAGMN_27585 0.23 +0.5
5,344,437 + oppF NIAGMN_27585 0.26 -0.6
5,344,438 - oppF NIAGMN_27585 0.26 -0.2
5,344,468 - oppF NIAGMN_27585 0.29 +0.0
5,344,468 - oppF NIAGMN_27585 0.29 +1.9
5,344,530 - oppF NIAGMN_27585 0.35 +0.4
5,344,796 - oppF NIAGMN_27585 0.61 +0.1

Or see this region's nucleotide sequence