Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27560

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyciB and yciA are separated by 104 nucleotidesyciA and tonB are separated by 39 nucleotidestonB and yciI are separated by 223 nucleotidesyciI and kch are separated by 300 nucleotides NIAGMN_27550: yciB - septation protein A, at 5,338,055 to 5,338,594 yciB NIAGMN_27555: yciA - acyl-CoA thioester hydrolase YciA, at 5,338,699 to 5,339,097 yciA NIAGMN_27560: tonB - TonB system transport protein TonB, at 5,339,137 to 5,339,856 tonB NIAGMN_27565: yciI - YciI family protein, at 5,340,080 to 5,340,376 yciI NIAGMN_27570: kch - voltage-gated potassium channel protein, at 5,340,677 to 5,341,930 kch Position (kb) 5339 5340Strain fitness (log2 ratio) -3 -2 -1 0 1at 5339.023 kb on - strand, within yciAat 5339.176 kb on - strandat 5339.390 kb on - strand, within tonBat 5339.449 kb on - strand, within tonBat 5339.569 kb on - strand, within tonBat 5339.744 kb on - strand, within tonBat 5339.770 kb on - strand, within tonBat 5339.772 kb on - strand, within tonBat 5339.772 kb on - strand, within tonBat 5339.866 kb on - strandat 5340.045 kb on + strandat 5340.092 kb on - strandat 5340.216 kb on + strand, within yciIat 5340.317 kb on + strand, within yciIat 5340.336 kb on - strand, within yciIat 5340.586 kb on - strandat 5340.796 kb on + strandat 5340.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,339,023 - yciA NIAGMN_27555 0.81 +1.5
5,339,176 - -0.3
5,339,390 - tonB NIAGMN_27560 0.35 -0.9
5,339,449 - tonB NIAGMN_27560 0.43 -2.1
5,339,569 - tonB NIAGMN_27560 0.60 -3.2
5,339,744 - tonB NIAGMN_27560 0.84 +0.2
5,339,770 - tonB NIAGMN_27560 0.88 +0.7
5,339,772 - tonB NIAGMN_27560 0.88 -1.8
5,339,772 - tonB NIAGMN_27560 0.88 +1.3
5,339,866 - +1.3
5,340,045 + -0.5
5,340,092 - -1.5
5,340,216 + yciI NIAGMN_27565 0.46 -0.2
5,340,317 + yciI NIAGMN_27565 0.80 +0.9
5,340,336 - yciI NIAGMN_27565 0.86 +1.1
5,340,586 - +0.6
5,340,796 + -1.8
5,340,797 - -0.7

Or see this region's nucleotide sequence