Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26995

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_26985 and NIAGMN_26990 overlap by 4 nucleotidesNIAGMN_26990 and NIAGMN_26995 are separated by 1 nucleotidesNIAGMN_26995 and NIAGMN_27000 are separated by 198 nucleotidesNIAGMN_27000 and NIAGMN_27005 are separated by 4 nucleotides NIAGMN_26985: NIAGMN_26985 - hypothetical protein, at 5,254,550 to 5,254,774 _26985 NIAGMN_26990: NIAGMN_26990 - lysis protein, at 5,254,771 to 5,255,265 _26990 NIAGMN_26995: NIAGMN_26995 - Phage protein, at 5,255,267 to 5,255,365 _26995 NIAGMN_27000: NIAGMN_27000 - SAR-endolysin, at 5,255,564 to 5,256,097 _27000 NIAGMN_27005: NIAGMN_27005 - holin, at 5,256,102 to 5,256,317 _27005 Position (kb) 5255 5256Strain fitness (log2 ratio) -1 0 1at 5254.676 kb on - strand, within NIAGMN_26985at 5254.676 kb on - strand, within NIAGMN_26985at 5255.330 kb on - strand, within NIAGMN_26995at 5256.149 kb on - strand, within NIAGMN_27005

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,254,676 - NIAGMN_26985 0.56 -1.3
5,254,676 - NIAGMN_26985 0.56 +0.2
5,255,330 - NIAGMN_26995 0.64 +0.5
5,256,149 - NIAGMN_27005 0.22 -1.1

Or see this region's nucleotide sequence