Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26465

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwcaG and NIAGMN_26460 are separated by 290 nucleotidesNIAGMN_26460 and ycjG overlap by 26 nucleotidesycjG and tpx are separated by 118 nucleotidestpx and tyrR are separated by 43 nucleotides NIAGMN_26455: wcaG - NAD-dependent dehydratase, at 5,147,170 to 5,147,808 wcaG NIAGMN_26460: NIAGMN_26460 - Murein peptide amidase A, at 5,148,099 to 5,148,827 _26460 NIAGMN_26465: ycjG - L-Ala-D/L-Glu epimerase, at 5,148,802 to 5,149,767 ycjG NIAGMN_26470: tpx - thiol peroxidase, at 5,149,886 to 5,150,392 tpx NIAGMN_26475: tyrR - transcriptional regulator TyrR, at 5,150,436 to 5,151,977 tyrR Position (kb) 5148 5149 5150Strain fitness (log2 ratio) -2 -1 0 1at 5147.840 kb on - strandat 5148.020 kb on + strandat 5148.157 kb on - strandat 5148.472 kb on + strand, within NIAGMN_26460at 5148.611 kb on - strand, within NIAGMN_26460at 5149.299 kb on + strand, within ycjGat 5149.300 kb on - strand, within ycjGat 5149.411 kb on - strand, within ycjGat 5149.729 kb on + strandat 5149.729 kb on + strandat 5149.826 kb on + strandat 5149.847 kb on - strandat 5149.970 kb on - strand, within tpxat 5150.399 kb on - strandat 5150.438 kb on - strandat 5150.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,147,840 - +0.9
5,148,020 + -0.6
5,148,157 - +0.5
5,148,472 + NIAGMN_26460 0.51 -1.2
5,148,611 - NIAGMN_26460 0.70 -1.0
5,149,299 + ycjG NIAGMN_26465 0.51 -0.3
5,149,300 - ycjG NIAGMN_26465 0.52 -1.3
5,149,411 - ycjG NIAGMN_26465 0.63 -1.8
5,149,729 + -0.5
5,149,729 + +0.4
5,149,826 + +0.4
5,149,847 - -1.3
5,149,970 - tpx NIAGMN_26470 0.17 -0.7
5,150,399 - -0.4
5,150,438 - +0.3
5,150,559 + +1.6

Or see this region's nucleotide sequence