Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26405

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and abgT are separated by 110 nucleotidesabgT and ogt are separated by 10 nucleotidesogt and fnr are separated by 194 nucleotides NIAGMN_26395: tnp-IS3 - IS3 family transposase, at 5,136,415 to 5,137,302 tnp-IS3 NIAGMN_26400: abgT - p-aminobenzoyl-glutamate transporter, at 5,137,413 to 5,138,105 abgT NIAGMN_26405: ogt - methylated-DNA--[protein]-cysteine S-methyltransferase, at 5,138,116 to 5,138,631 ogt NIAGMN_26410: fnr - fumarate/nitrate reduction transcriptional regulator Fnr, at 5,138,826 to 5,139,578 fnr Position (kb) 5138 5139Strain fitness (log2 ratio) -1 0 1 2at 5137.381 kb on + strandat 5137.382 kb on - strandat 5138.126 kb on + strandat 5138.320 kb on + strand, within ogtat 5138.344 kb on - strand, within ogtat 5138.525 kb on + strand, within ogtat 5138.809 kb on - strandat 5138.848 kb on + strandat 5138.954 kb on + strand, within fnrat 5138.957 kb on + strand, within fnrat 5138.957 kb on + strand, within fnrat 5138.978 kb on + strand, within fnrat 5139.002 kb on + strand, within fnrat 5139.020 kb on + strand, within fnrat 5139.020 kb on + strand, within fnrat 5139.062 kb on + strand, within fnrat 5139.106 kb on + strand, within fnrat 5139.349 kb on - strand, within fnrat 5139.513 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,137,381 + -0.3
5,137,382 - +2.6
5,138,126 + +0.6
5,138,320 + ogt NIAGMN_26405 0.40 -0.2
5,138,344 - ogt NIAGMN_26405 0.44 -0.8
5,138,525 + ogt NIAGMN_26405 0.79 +0.4
5,138,809 - -0.4
5,138,848 + -0.3
5,138,954 + fnr NIAGMN_26410 0.17 +0.4
5,138,957 + fnr NIAGMN_26410 0.17 +0.6
5,138,957 + fnr NIAGMN_26410 0.17 +0.7
5,138,978 + fnr NIAGMN_26410 0.20 +0.2
5,139,002 + fnr NIAGMN_26410 0.23 -1.1
5,139,020 + fnr NIAGMN_26410 0.26 +1.2
5,139,020 + fnr NIAGMN_26410 0.26 +1.7
5,139,062 + fnr NIAGMN_26410 0.31 +0.7
5,139,106 + fnr NIAGMN_26410 0.37 +0.5
5,139,349 - fnr NIAGMN_26410 0.69 +0.0
5,139,513 + +1.5

Or see this region's nucleotide sequence