Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26320

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecT and rcbA are separated by 242 nucleotidesrcbA and xisR are separated by 99 nucleotidesxisR and fimB are separated by 1 nucleotidesfimB and ttcA are separated by 51 nucleotides NIAGMN_26300: recT - recombination protein RecT, at 5,122,247 to 5,123,056 recT NIAGMN_26305: rcbA - Double-strand break reduction protein, at 5,123,299 to 5,123,487 rcbA NIAGMN_26315: xisR - excisionase XisR, at 5,123,587 to 5,123,802 xisR NIAGMN_26320: fimB - site-specific integrase, at 5,123,804 to 5,125,039 fimB NIAGMN_26325: ttcA - tRNA 2-thiocytidine(32) synthetase TtcA, at 5,125,091 to 5,126,026 ttcA Position (kb) 5123 5124 5125 5126Strain fitness (log2 ratio) -2 -1 0 1 2at 5123.804 kb on - strandat 5124.293 kb on + strand, within fimBat 5124.583 kb on + strand, within fimBat 5124.583 kb on + strand, within fimBat 5124.630 kb on + strand, within fimBat 5124.707 kb on + strand, within fimBat 5124.707 kb on + strand, within fimBat 5124.880 kb on + strand, within fimBat 5124.925 kb on + strandat 5124.925 kb on + strandat 5125.011 kb on + strandat 5125.192 kb on + strand, within ttcAat 5125.249 kb on + strand, within ttcAat 5125.250 kb on - strand, within ttcAat 5125.491 kb on - strand, within ttcAat 5125.569 kb on + strand, within ttcAat 5125.600 kb on + strand, within ttcAat 5125.675 kb on + strand, within ttcA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,123,804 - +0.4
5,124,293 + fimB NIAGMN_26320 0.40 +0.9
5,124,583 + fimB NIAGMN_26320 0.63 -2.0
5,124,583 + fimB NIAGMN_26320 0.63 +0.3
5,124,630 + fimB NIAGMN_26320 0.67 +1.2
5,124,707 + fimB NIAGMN_26320 0.73 -2.7
5,124,707 + fimB NIAGMN_26320 0.73 -0.3
5,124,880 + fimB NIAGMN_26320 0.87 -1.5
5,124,925 + +2.4
5,124,925 + -1.0
5,125,011 + -0.3
5,125,192 + ttcA NIAGMN_26325 0.11 +0.9
5,125,249 + ttcA NIAGMN_26325 0.17 -0.3
5,125,250 - ttcA NIAGMN_26325 0.17 +0.6
5,125,491 - ttcA NIAGMN_26325 0.43 -0.1
5,125,569 + ttcA NIAGMN_26325 0.51 +1.1
5,125,600 + ttcA NIAGMN_26325 0.54 -1.3
5,125,675 + ttcA NIAGMN_26325 0.62 +0.3

Or see this region's nucleotide sequence