Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25540

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNIAGMN_25530 and NIAGMN_25535 are separated by 122 nucleotidesNIAGMN_25535 and espR1 are separated by 62 nucleotidesespR1 and narU are separated by 305 nucleotides NIAGMN_25530: NIAGMN_25530 - IpaH-like protein, at 4,979,719 to 4,980,222 _25530 NIAGMN_25535: NIAGMN_25535 - leucine Rich Repeat family protein, at 4,980,345 to 4,980,977 _25535 NIAGMN_25540: espR1 - T3SS effector leucine-rich repeat protein EspR1, at 4,981,040 to 4,982,299 espR1 NIAGMN_25545: narU - nitrate/nitrite transporter NarU, at 4,982,605 to 4,983,993 narU Position (kb) 4981 4982 4983Strain fitness (log2 ratio) -1 0 1at 4980.893 kb on + strand, within NIAGMN_25535at 4982.129 kb on - strand, within espR1at 4982.330 kb on + strandat 4983.125 kb on + strand, within narU

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
4,980,893 + NIAGMN_25535 0.87 +0.4
4,982,129 - espR1 NIAGMN_25540 0.86 +0.2
4,982,330 + -0.2
4,983,125 + narU NIAGMN_25545 0.37 -0.4

Or see this region's nucleotide sequence