Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lsrK and NIAGMN_25330 are separated by 530 nucleotides NIAGMN_25330 and NIAGMN_25335 overlap by 4 nucleotides
NIAGMN_25325: lsrK - autoinducer-2 kinase, at 4,921,770 to 4,923,362
lsrK
NIAGMN_25330: NIAGMN_25330 - ECSE_1600 family autotransporter, at 4,923,893 to 4,927,924
_25330
NIAGMN_25335: NIAGMN_25335 - Autotransporter domain-containing protein, at 4,927,921 to 4,929,321
_25335
Position (kb)
4923
4924
4925
4926
4927
4928 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 4923.974 kb on - strand at 4924.376 kb on + strand, within NIAGMN_25330 at 4924.473 kb on - strand, within NIAGMN_25330 at 4924.488 kb on + strand, within NIAGMN_25330 at 4924.940 kb on + strand, within NIAGMN_25330 at 4925.446 kb on + strand, within NIAGMN_25330 at 4925.500 kb on + strand, within NIAGMN_25330 at 4925.500 kb on + strand, within NIAGMN_25330 at 4925.608 kb on + strand, within NIAGMN_25330 at 4925.708 kb on + strand, within NIAGMN_25330 at 4925.709 kb on - strand, within NIAGMN_25330 at 4925.926 kb on + strand, within NIAGMN_25330 at 4925.927 kb on - strand, within NIAGMN_25330 at 4925.927 kb on - strand, within NIAGMN_25330 at 4926.310 kb on + strand, within NIAGMN_25330 at 4926.487 kb on + strand, within NIAGMN_25330 at 4926.487 kb on + strand, within NIAGMN_25330 at 4926.541 kb on + strand, within NIAGMN_25330 at 4927.028 kb on + strand, within NIAGMN_25330 at 4927.028 kb on + strand, within NIAGMN_25330 at 4927.047 kb on + strand, within NIAGMN_25330 at 4927.784 kb on - strand at 4928.200 kb on + strand, within NIAGMN_25335 at 4928.553 kb on - strand, within NIAGMN_25335 at 4928.650 kb on - strand, within NIAGMN_25335 at 4928.726 kb on - strand, within NIAGMN_25335 at 4928.755 kb on + strand, within NIAGMN_25335 at 4928.779 kb on - strand, within NIAGMN_25335
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,923,974 - +3.7 4,924,376 + NIAGMN_25330 0.12 +1.0 4,924,473 - NIAGMN_25330 0.14 +0.4 4,924,488 + NIAGMN_25330 0.15 +1.0 4,924,940 + NIAGMN_25330 0.26 -5.6 4,925,446 + NIAGMN_25330 0.39 -0.8 4,925,500 + NIAGMN_25330 0.40 +0.1 4,925,500 + NIAGMN_25330 0.40 +0.4 4,925,608 + NIAGMN_25330 0.43 +0.2 4,925,708 + NIAGMN_25330 0.45 -1.9 4,925,709 - NIAGMN_25330 0.45 -1.1 4,925,926 + NIAGMN_25330 0.50 -0.2 4,925,927 - NIAGMN_25330 0.50 +0.8 4,925,927 - NIAGMN_25330 0.50 -2.0 4,926,310 + NIAGMN_25330 0.60 -0.5 4,926,487 + NIAGMN_25330 0.64 +0.4 4,926,487 + NIAGMN_25330 0.64 -1.1 4,926,541 + NIAGMN_25330 0.66 -0.5 4,927,028 + NIAGMN_25330 0.78 -1.1 4,927,028 + NIAGMN_25330 0.78 +0.2 4,927,047 + NIAGMN_25330 0.78 +0.5 4,927,784 - -1.0 4,928,200 + NIAGMN_25335 0.20 +0.0 4,928,553 - NIAGMN_25335 0.45 -0.7 4,928,650 - NIAGMN_25335 0.52 +0.6 4,928,726 - NIAGMN_25335 0.57 +1.1 4,928,755 + NIAGMN_25335 0.60 +1.5 4,928,779 - NIAGMN_25335 0.61 -0.1
Or see this region's nucleotide sequence