Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24045

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdoH and yceK are separated by 172 nucleotidesyceK and msyB are separated by 0 nucleotidesmsyB and mdtG are separated by 82 nucleotides NIAGMN_24035: mdoH - glucans biosynthesis glucosyltransferase MdoH, at 4,703,776 to 4,706,289 mdoH NIAGMN_24045: yceK - YceK/YidQ family lipoprotein, at 4,706,462 to 4,706,689 yceK NIAGMN_24050: msyB - MysB family protein, at 4,706,690 to 4,707,064 msyB NIAGMN_24055: mdtG - multidrug efflux MFS transporter MdtG, at 4,707,147 to 4,708,118 mdtG Position (kb) 4706 4707Strain fitness (log2 ratio) -1 0 1 2 3at 4706.240 kb on + strandat 4706.265 kb on + strandat 4706.287 kb on + strandat 4706.295 kb on + strandat 4706.295 kb on + strandat 4706.687 kb on + strandat 4706.780 kb on + strand, within msyBat 4706.781 kb on - strand, within msyBat 4706.873 kb on + strand, within msyBat 4707.197 kb on - strandat 4707.332 kb on + strand, within mdtGat 4707.332 kb on + strand, within mdtGat 4707.362 kb on - strand, within mdtG

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,706,240 + +0.8
4,706,265 + +0.3
4,706,287 + -0.8
4,706,295 + -1.1
4,706,295 + +3.3
4,706,687 + +0.4
4,706,780 + msyB NIAGMN_24050 0.24 +0.4
4,706,781 - msyB NIAGMN_24050 0.24 +2.6
4,706,873 + msyB NIAGMN_24050 0.49 +2.3
4,707,197 - -0.8
4,707,332 + mdtG NIAGMN_24055 0.19 -0.5
4,707,332 + mdtG NIAGMN_24055 0.19 +0.3
4,707,362 - mdtG NIAGMN_24055 0.22 +0.1

Or see this region's nucleotide sequence