Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gfcD and gfcC overlap by 1 nucleotides gfcC and gfcB overlap by 4 nucleotides gfcB and NIAGMN_23115 are separated by 106 nucleotides
NIAGMN_23100: gfcD - Uncharacterized lipoprotein GfcD, at 4,546,285 to 4,548,381
gfcD
NIAGMN_23105: gfcC - Uncharacterized protein GfcC, at 4,548,381 to 4,549,127
gfcC
NIAGMN_23110: gfcB - Uncharacterized lipoprotein GfcB, at 4,549,124 to 4,549,768
gfcB
NIAGMN_23115: NIAGMN_23115 - Threonine-rich inner membrane protein GfcA, at 4,549,875 to 4,550,180
_23115
Position (kb) 4548
4549
4550 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4547.386 kb on - strand, within gfcD at 4547.387 kb on + strand, within gfcD at 4547.388 kb on - strand, within gfcD at 4547.438 kb on + strand, within gfcD at 4547.507 kb on + strand, within gfcD at 4547.508 kb on - strand, within gfcD at 4547.751 kb on - strand, within gfcD at 4547.844 kb on + strand, within gfcD at 4547.875 kb on - strand, within gfcD at 4547.875 kb on - strand, within gfcD at 4547.887 kb on - strand, within gfcD at 4547.955 kb on - strand, within gfcD at 4548.105 kb on - strand, within gfcD at 4548.109 kb on - strand, within gfcD at 4548.109 kb on - strand, within gfcD at 4548.109 kb on - strand, within gfcD at 4548.109 kb on - strand, within gfcD at 4548.109 kb on - strand, within gfcD at 4548.306 kb on - strand at 4548.314 kb on - strand at 4548.427 kb on - strand at 4548.555 kb on - strand, within gfcC at 4548.570 kb on - strand, within gfcC at 4548.680 kb on + strand, within gfcC at 4548.704 kb on - strand, within gfcC at 4548.704 kb on - strand, within gfcC at 4548.711 kb on - strand, within gfcC at 4548.712 kb on + strand, within gfcC at 4548.713 kb on - strand, within gfcC at 4548.792 kb on - strand, within gfcC at 4549.117 kb on - strand at 4549.494 kb on - strand, within gfcB at 4549.562 kb on + strand, within gfcB at 4549.565 kb on - strand, within gfcB at 4549.565 kb on - strand, within gfcB at 4549.567 kb on - strand, within gfcB at 4549.624 kb on - strand, within gfcB at 4549.721 kb on - strand at 4549.757 kb on - strand at 4549.852 kb on - strand at 4549.908 kb on - strand, within NIAGMN_23115 at 4550.031 kb on - strand, within NIAGMN_23115
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,547,386 - gfcD NIAGMN_23100 0.53 -0.4 4,547,387 + gfcD NIAGMN_23100 0.53 +0.9 4,547,388 - gfcD NIAGMN_23100 0.53 -0.1 4,547,438 + gfcD NIAGMN_23100 0.55 +1.9 4,547,507 + gfcD NIAGMN_23100 0.58 -0.2 4,547,508 - gfcD NIAGMN_23100 0.58 -1.2 4,547,751 - gfcD NIAGMN_23100 0.70 -1.5 4,547,844 + gfcD NIAGMN_23100 0.74 +0.4 4,547,875 - gfcD NIAGMN_23100 0.76 +1.3 4,547,875 - gfcD NIAGMN_23100 0.76 +0.3 4,547,887 - gfcD NIAGMN_23100 0.76 +0.0 4,547,955 - gfcD NIAGMN_23100 0.80 -1.8 4,548,105 - gfcD NIAGMN_23100 0.87 +0.1 4,548,109 - gfcD NIAGMN_23100 0.87 -0.2 4,548,109 - gfcD NIAGMN_23100 0.87 -0.5 4,548,109 - gfcD NIAGMN_23100 0.87 -0.8 4,548,109 - gfcD NIAGMN_23100 0.87 -2.1 4,548,109 - gfcD NIAGMN_23100 0.87 -1.2 4,548,306 - +1.4 4,548,314 - -0.3 4,548,427 - -1.6 4,548,555 - gfcC NIAGMN_23105 0.23 -0.3 4,548,570 - gfcC NIAGMN_23105 0.25 +1.4 4,548,680 + gfcC NIAGMN_23105 0.40 -2.4 4,548,704 - gfcC NIAGMN_23105 0.43 -1.0 4,548,704 - gfcC NIAGMN_23105 0.43 -0.7 4,548,711 - gfcC NIAGMN_23105 0.44 -0.3 4,548,712 + gfcC NIAGMN_23105 0.44 -0.6 4,548,713 - gfcC NIAGMN_23105 0.44 -0.6 4,548,792 - gfcC NIAGMN_23105 0.55 -0.8 4,549,117 - -0.3 4,549,494 - gfcB NIAGMN_23110 0.57 +1.2 4,549,562 + gfcB NIAGMN_23110 0.68 -1.0 4,549,565 - gfcB NIAGMN_23110 0.68 +0.7 4,549,565 - gfcB NIAGMN_23110 0.68 +1.1 4,549,567 - gfcB NIAGMN_23110 0.69 -1.4 4,549,624 - gfcB NIAGMN_23110 0.78 +1.0 4,549,721 - +2.2 4,549,757 - -0.8 4,549,852 - +1.1 4,549,908 - NIAGMN_23115 0.11 -0.4 4,550,031 - NIAGMN_23115 0.51 -1.4
Or see this region's nucleotide sequence