Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and NIAGMN_22885 are separated by 319 nucleotides NIAGMN_22885 and NIAGMN_22890 are separated by 4 nucleotides NIAGMN_22890 and NIAGMN_22895 are separated by 50 nucleotides NIAGMN_22895 and NIAGMN_22900 are separated by 155 nucleotides NIAGMN_22900 and NIAGMN_22905 are separated by 12 nucleotides NIAGMN_22905 and NIAGMN_22910 are separated by 7 nucleotides
NIAGMN_22880: tnp-IS3 - IS3 family transposase, at 4,506,513 to 4,506,839
tnp-IS3
NIAGMN_22885: NIAGMN_22885 - lysis protein, at 4,507,159 to 4,507,365
_22885
NIAGMN_22890: NIAGMN_22890 - DUF1327 domain-containing protein, at 4,507,370 to 4,507,714
_22890
NIAGMN_22895: NIAGMN_22895 - SAR-endolysin, at 4,507,765 to 4,508,298
_22895
NIAGMN_22900: NIAGMN_22900 - hypothetical protein, at 4,508,454 to 4,508,636
_22900
NIAGMN_22905: NIAGMN_22905 - hypothetical protein, at 4,508,649 to 4,508,780
_22905
NIAGMN_22910: NIAGMN_22910 - lysis protein, at 4,508,788 to 4,509,255
_22910
Position (kb)
4507
4508
4509 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4506.928 kb on + strand at 4506.928 kb on + strand at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.933 kb on - strand at 4506.933 kb on - strand at 4506.933 kb on - strand at 4506.933 kb on - strand at 4506.935 kb on - strand at 4506.981 kb on + strand at 4506.981 kb on + strand at 4506.993 kb on + strand at 4508.134 kb on + strand, within NIAGMN_22895 at 4508.145 kb on + strand, within NIAGMN_22895 at 4508.726 kb on + strand, within NIAGMN_22905 at 4508.756 kb on - strand, within NIAGMN_22905 at 4508.947 kb on - strand, within NIAGMN_22910
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,506,928 + +1.0 4,506,928 + -0.0 4,506,929 - +1.3 4,506,929 - +1.8 4,506,929 - +0.7 4,506,929 - -0.4 4,506,929 - +1.8 4,506,932 + +0.3 4,506,932 + +0.7 4,506,932 + -0.4 4,506,932 + -0.5 4,506,932 + -2.5 4,506,932 + -0.6 4,506,932 + +2.4 4,506,932 + -1.1 4,506,932 + +0.2 4,506,933 - +2.5 4,506,933 - -2.9 4,506,933 - -0.2 4,506,933 - +2.3 4,506,935 - +2.3 4,506,981 + -1.4 4,506,981 + -0.9 4,506,993 + -2.1 4,508,134 + NIAGMN_22895 0.69 +0.4 4,508,145 + NIAGMN_22895 0.71 +0.5 4,508,726 + NIAGMN_22905 0.58 -0.7 4,508,756 - NIAGMN_22905 0.81 -0.3 4,508,947 - NIAGMN_22910 0.34 +0.5
Or see this region's nucleotide sequence