Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22820

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_22805 and NIAGMN_22810 are separated by 109 nucleotidesNIAGMN_22810 and NIAGMN_22820 are separated by 186 nucleotidesNIAGMN_22820 and NIAGMN_22825 are separated by 447 nucleotides NIAGMN_22805: NIAGMN_22805 - DUF551 domain-containing protein, at 4,498,423 to 4,498,986 _22805 NIAGMN_22810: NIAGMN_22810 - hypothetical protein, at 4,499,096 to 4,499,200 _22810 NIAGMN_22820: NIAGMN_22820 - protein hokC, at 4,499,387 to 4,499,599 _22820 NIAGMN_22825: NIAGMN_22825 - DUF968 domain-containing protein, at 4,500,047 to 4,501,096 _22825 Position (kb) 4499 4500Strain fitness (log2 ratio) -2 -1 0 1 2at 4498.939 kb on + strandat 4499.015 kb on + strandat 4499.015 kb on + strandat 4499.015 kb on + strandat 4499.017 kb on + strandat 4499.017 kb on + strandat 4499.017 kb on + strandat 4499.017 kb on + strandat 4499.018 kb on - strandat 4499.018 kb on - strandat 4499.021 kb on + strandat 4499.021 kb on + strandat 4499.095 kb on + strandat 4499.095 kb on + strandat 4499.095 kb on + strandat 4499.095 kb on + strandat 4499.095 kb on + strandat 4499.264 kb on - strandat 4499.402 kb on - strandat 4499.402 kb on - strandat 4499.860 kb on + strandat 4500.175 kb on + strand, within NIAGMN_22825

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,498,939 + +2.4
4,499,015 + +1.9
4,499,015 + +0.1
4,499,015 + +1.1
4,499,017 + +0.3
4,499,017 + -1.1
4,499,017 + +0.9
4,499,017 + +1.7
4,499,018 - +0.9
4,499,018 - -0.3
4,499,021 + -1.2
4,499,021 + +0.2
4,499,095 + +0.3
4,499,095 + -1.0
4,499,095 + -2.1
4,499,095 + +0.4
4,499,095 + -0.6
4,499,264 - -0.0
4,499,402 - +1.1
4,499,402 - +2.2
4,499,860 + -0.6
4,500,175 + NIAGMN_22825 0.12 -1.9

Or see this region's nucleotide sequence