Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22675

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_22670 and Asn_trna are separated by 448 nucleotidesAsn_trna and ycdB are separated by 449 nucleotides NIAGMN_22670: NIAGMN_22670 - EmmdR/YeeO family multidrug/toxin efflux MATE transporter, at 4,471,244 to 4,472,350 _22670 NIAGMN_22675: Asn_trna - tRNA-Asn(gtt), at 4,472,799 to 4,472,874 _trna NIAGMN_22680: ycdB - putative transcriptional regulatory protein YcdB, at 4,473,324 to 4,474,040 ycdB Position (kb) 4472 4473Strain fitness (log2 ratio) -2 -1 0 1 2at 4471.915 kb on + strand, within NIAGMN_22670at 4472.064 kb on + strand, within NIAGMN_22670at 4472.197 kb on + strand, within NIAGMN_22670at 4472.348 kb on + strandat 4472.404 kb on + strandat 4472.473 kb on + strandat 4472.522 kb on + strandat 4472.522 kb on + strandat 4473.655 kb on + strand, within ycdB

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,471,915 + NIAGMN_22670 0.61 -2.0
4,472,064 + NIAGMN_22670 0.74 +1.1
4,472,197 + NIAGMN_22670 0.86 +2.0
4,472,348 + +0.7
4,472,404 + +1.6
4,472,473 + -1.5
4,472,522 + +1.3
4,472,522 + -0.6
4,473,655 + ycdB NIAGMN_22680 0.46 +1.3

Or see this region's nucleotide sequence