Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22605

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and NIAGMN_22605 are separated by 255 nucleotidesNIAGMN_22605 and fepA overlap by 13 nucleotides NIAGMN_22595: tnp-IS3 - IS3 family transposase, at 4,457,284 to 4,458,171 tnp-IS3 NIAGMN_22600: tnp-IS3 - IS3 family transposase, at 4,458,171 to 4,458,497 tnp-IS3 NIAGMN_22605: NIAGMN_22605 - hypothetical protein, at 4,458,753 to 4,458,881 _22605 NIAGMN_22610: fepA - TonB-dependent receptor, at 4,458,869 to 4,461,016 fepA Position (kb) 4458 4459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4458.586 kb on - strandat 4458.678 kb on - strandat 4458.696 kb on + strandat 4458.696 kb on + strandat 4458.800 kb on + strand, within NIAGMN_22605at 4458.892 kb on + strandat 4458.935 kb on - strandat 4459.007 kb on - strandat 4459.110 kb on - strand, within fepAat 4459.345 kb on + strand, within fepAat 4459.682 kb on - strand, within fepA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,458,586 - -1.6
4,458,678 - +0.5
4,458,696 + -0.6
4,458,696 + -0.9
4,458,800 + NIAGMN_22605 0.36 +0.5
4,458,892 + -3.2
4,458,935 - +0.1
4,459,007 - +0.2
4,459,110 - fepA NIAGMN_22610 0.11 +2.3
4,459,345 + fepA NIAGMN_22610 0.22 -0.9
4,459,682 - fepA NIAGMN_22610 0.38 +0.4

Or see this region's nucleotide sequence