Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeX and yeeW are separated by 897 nucleotides yeeW and NIAGMN_22540 are separated by 106 nucleotides NIAGMN_22540 and cbtA are separated by 88 nucleotides cbtA and yeeT are separated by 73 nucleotides
NIAGMN_22530: yeeX - DUF496 domain-containing protein, at 4,448,505 to 4,448,834
yeeX
NIAGMN_22535: yeeW - Protein YeeW, at 4,449,732 to 4,449,926
yeeW
NIAGMN_22540: NIAGMN_22540 - toxin of the YeeV-YeeU toxin-antitoxin system, at 4,450,033 to 4,450,296
_22540
NIAGMN_22545: cbtA - type IV toxin-antitoxin system toxin CbtA, at 4,450,385 to 4,450,753
cbtA
NIAGMN_22550: yeeT - Uncharacterized protein YeeT, at 4,450,827 to 4,451,048
yeeT
Position (kb) 4449
4450 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4448.739 kb on + strand, within yeeX at 4448.739 kb on + strand, within yeeX at 4448.897 kb on + strand at 4448.928 kb on - strand at 4449.312 kb on - strand at 4449.350 kb on + strand at 4449.711 kb on - strand at 4449.831 kb on - strand, within yeeW at 4449.846 kb on - strand, within yeeW at 4449.895 kb on - strand, within yeeW at 4449.895 kb on - strand, within yeeW at 4449.895 kb on - strand, within yeeW at 4449.944 kb on - strand at 4450.225 kb on + strand, within NIAGMN_22540 at 4450.225 kb on + strand, within NIAGMN_22540 at 4450.279 kb on + strand at 4450.279 kb on + strand at 4450.285 kb on + strand at 4450.314 kb on + strand at 4450.428 kb on + strand, within cbtA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,448,739 + yeeX NIAGMN_22530 0.71 +0.9 4,448,739 + yeeX NIAGMN_22530 0.71 -1.1 4,448,897 + +1.3 4,448,928 - +2.1 4,449,312 - -0.6 4,449,350 + +0.5 4,449,711 - +0.0 4,449,831 - yeeW NIAGMN_22535 0.51 +1.7 4,449,846 - yeeW NIAGMN_22535 0.58 -0.1 4,449,895 - yeeW NIAGMN_22535 0.84 -1.1 4,449,895 - yeeW NIAGMN_22535 0.84 -2.0 4,449,895 - yeeW NIAGMN_22535 0.84 +1.4 4,449,944 - -2.2 4,450,225 + NIAGMN_22540 0.73 +0.4 4,450,225 + NIAGMN_22540 0.73 +1.4 4,450,279 + -0.6 4,450,279 + +2.7 4,450,285 + +1.6 4,450,314 + -1.0 4,450,428 + cbtA NIAGMN_22545 0.12 -1.3
Or see this region's nucleotide sequence