Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gtdA and ycgM are separated by 14 nucleotides ycgM and maiA are separated by 8 nucleotides maiA and ubiH are separated by 14 nucleotides
NIAGMN_21360: gtdA - gentisate 1,2-dioxygenase, at 4,237,276 to 4,238,304
gtdA
NIAGMN_21365: ycgM - 5-carboxymethyl-2-hydroxymuconate isomerase, at 4,238,319 to 4,239,020
ycgM
NIAGMN_21370: maiA - maleylacetoacetate isomerase, at 4,239,029 to 4,239,673
maiA
NIAGMN_21375: ubiH - 3-hydroxybenzoate 6-monooxygenase, at 4,239,688 to 4,240,881
ubiH
Position (kb) 4238
4239
4240 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4237.320 kb on + strand at 4237.320 kb on + strand at 4237.321 kb on - strand at 4237.389 kb on + strand, within gtdA at 4237.389 kb on + strand, within gtdA at 4237.538 kb on + strand, within gtdA at 4237.538 kb on + strand, within gtdA at 4237.538 kb on + strand, within gtdA at 4237.538 kb on + strand, within gtdA at 4237.540 kb on + strand, within gtdA at 4237.540 kb on + strand, within gtdA at 4237.540 kb on + strand, within gtdA at 4237.683 kb on + strand, within gtdA at 4237.683 kb on + strand, within gtdA at 4237.833 kb on + strand, within gtdA at 4237.918 kb on + strand, within gtdA at 4237.918 kb on + strand, within gtdA at 4237.918 kb on + strand, within gtdA at 4237.919 kb on - strand, within gtdA at 4237.990 kb on + strand, within gtdA at 4237.990 kb on + strand, within gtdA at 4238.003 kb on - strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.113 kb on + strand, within gtdA at 4238.114 kb on - strand, within gtdA at 4238.114 kb on - strand, within gtdA at 4238.114 kb on - strand, within gtdA at 4238.114 kb on - strand, within gtdA at 4238.114 kb on - strand, within gtdA at 4238.131 kb on - strand, within gtdA at 4238.169 kb on + strand, within gtdA at 4238.181 kb on + strand, within gtdA at 4238.241 kb on - strand at 4238.245 kb on - strand at 4238.302 kb on + strand at 4238.303 kb on - strand at 4238.328 kb on + strand at 4238.328 kb on + strand at 4238.328 kb on + strand at 4238.332 kb on + strand at 4238.417 kb on + strand, within ycgM at 4238.417 kb on + strand, within ycgM at 4238.417 kb on + strand, within ycgM at 4238.422 kb on - strand, within ycgM at 4238.556 kb on - strand, within ycgM at 4238.559 kb on + strand, within ycgM at 4238.560 kb on - strand, within ycgM at 4238.560 kb on - strand, within ycgM at 4238.663 kb on + strand, within ycgM at 4238.663 kb on + strand, within ycgM at 4238.789 kb on + strand, within ycgM at 4238.880 kb on + strand, within ycgM at 4238.930 kb on + strand, within ycgM at 4238.993 kb on - strand at 4239.038 kb on + strand at 4239.038 kb on + strand at 4239.052 kb on + strand at 4239.100 kb on + strand, within maiA at 4239.100 kb on + strand, within maiA at 4239.100 kb on + strand, within maiA at 4239.101 kb on - strand, within maiA at 4239.104 kb on + strand, within maiA at 4239.258 kb on - strand, within maiA at 4239.352 kb on + strand, within maiA at 4239.352 kb on + strand, within maiA at 4239.419 kb on + strand, within maiA at 4239.684 kb on + strand at 4239.684 kb on + strand at 4239.684 kb on + strand at 4239.684 kb on + strand at 4239.710 kb on + strand at 4239.912 kb on + strand, within ubiH at 4239.912 kb on + strand, within ubiH at 4239.994 kb on + strand, within ubiH
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,237,320 + -1.4 4,237,320 + -0.3 4,237,321 - -2.4 4,237,389 + gtdA NIAGMN_21360 0.11 +1.2 4,237,389 + gtdA NIAGMN_21360 0.11 +0.6 4,237,538 + gtdA NIAGMN_21360 0.25 -0.6 4,237,538 + gtdA NIAGMN_21360 0.25 -1.9 4,237,538 + gtdA NIAGMN_21360 0.25 +0.6 4,237,538 + gtdA NIAGMN_21360 0.25 +1.8 4,237,540 + gtdA NIAGMN_21360 0.26 -0.5 4,237,540 + gtdA NIAGMN_21360 0.26 +0.6 4,237,540 + gtdA NIAGMN_21360 0.26 +2.2 4,237,683 + gtdA NIAGMN_21360 0.40 +0.5 4,237,683 + gtdA NIAGMN_21360 0.40 +2.1 4,237,833 + gtdA NIAGMN_21360 0.54 +0.4 4,237,918 + gtdA NIAGMN_21360 0.62 -1.8 4,237,918 + gtdA NIAGMN_21360 0.62 +0.2 4,237,918 + gtdA NIAGMN_21360 0.62 -0.6 4,237,919 - gtdA NIAGMN_21360 0.62 -0.4 4,237,990 + gtdA NIAGMN_21360 0.69 -0.1 4,237,990 + gtdA NIAGMN_21360 0.69 +0.7 4,238,003 - gtdA NIAGMN_21360 0.71 -0.5 4,238,113 + gtdA NIAGMN_21360 0.81 -0.9 4,238,113 + gtdA NIAGMN_21360 0.81 -0.1 4,238,113 + gtdA NIAGMN_21360 0.81 -0.0 4,238,113 + gtdA NIAGMN_21360 0.81 +0.4 4,238,113 + gtdA NIAGMN_21360 0.81 +2.6 4,238,113 + gtdA NIAGMN_21360 0.81 -1.5 4,238,113 + gtdA NIAGMN_21360 0.81 -0.4 4,238,113 + gtdA NIAGMN_21360 0.81 -1.1 4,238,113 + gtdA NIAGMN_21360 0.81 +0.4 4,238,114 - gtdA NIAGMN_21360 0.81 -1.2 4,238,114 - gtdA NIAGMN_21360 0.81 -0.9 4,238,114 - gtdA NIAGMN_21360 0.81 +0.5 4,238,114 - gtdA NIAGMN_21360 0.81 +0.2 4,238,114 - gtdA NIAGMN_21360 0.81 -2.2 4,238,131 - gtdA NIAGMN_21360 0.83 +1.2 4,238,169 + gtdA NIAGMN_21360 0.87 -0.1 4,238,181 + gtdA NIAGMN_21360 0.88 +0.6 4,238,241 - -1.9 4,238,245 - +0.8 4,238,302 + +1.7 4,238,303 - -0.2 4,238,328 + +0.2 4,238,328 + +0.6 4,238,328 + +0.8 4,238,332 + -0.4 4,238,417 + ycgM NIAGMN_21365 0.14 +0.6 4,238,417 + ycgM NIAGMN_21365 0.14 +0.2 4,238,417 + ycgM NIAGMN_21365 0.14 +2.6 4,238,422 - ycgM NIAGMN_21365 0.15 -0.6 4,238,556 - ycgM NIAGMN_21365 0.34 -1.9 4,238,559 + ycgM NIAGMN_21365 0.34 -0.6 4,238,560 - ycgM NIAGMN_21365 0.34 +0.9 4,238,560 - ycgM NIAGMN_21365 0.34 +3.1 4,238,663 + ycgM NIAGMN_21365 0.49 +1.4 4,238,663 + ycgM NIAGMN_21365 0.49 -0.8 4,238,789 + ycgM NIAGMN_21365 0.67 +0.9 4,238,880 + ycgM NIAGMN_21365 0.80 -0.5 4,238,930 + ycgM NIAGMN_21365 0.87 +0.3 4,238,993 - +0.6 4,239,038 + -0.9 4,239,038 + -0.9 4,239,052 + +0.5 4,239,100 + maiA NIAGMN_21370 0.11 -1.1 4,239,100 + maiA NIAGMN_21370 0.11 +0.1 4,239,100 + maiA NIAGMN_21370 0.11 -0.0 4,239,101 - maiA NIAGMN_21370 0.11 +1.2 4,239,104 + maiA NIAGMN_21370 0.12 -0.2 4,239,258 - maiA NIAGMN_21370 0.36 -1.5 4,239,352 + maiA NIAGMN_21370 0.50 +0.3 4,239,352 + maiA NIAGMN_21370 0.50 -0.5 4,239,419 + maiA NIAGMN_21370 0.60 -2.1 4,239,684 + -0.8 4,239,684 + +1.1 4,239,684 + +0.4 4,239,684 + +0.2 4,239,710 + -0.6 4,239,912 + ubiH NIAGMN_21375 0.19 -0.6 4,239,912 + ubiH NIAGMN_21375 0.19 -1.3 4,239,994 + ubiH NIAGMN_21375 0.26 -0.2
Or see this region's nucleotide sequence