Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napC and ccmA are separated by 18 nucleotides ccmA and ccmB overlap by 4 nucleotides ccmB and ccmC are separated by 41 nucleotides ccmC and ccmD overlap by 4 nucleotides ccmD and ccmE overlap by 4 nucleotides
NIAGMN_21040: napC - cytochrome c-type protein NapC, at 4,168,546 to 4,169,148
napC
NIAGMN_21045: ccmA - cytochrome c biogenesis heme-transporting ATPase CcmA, at 4,169,167 to 4,169,784
ccmA
NIAGMN_21050: ccmB - heme exporter protein CcmB, at 4,169,781 to 4,170,443
ccmB
NIAGMN_21055: ccmC - heme exporter protein CcmC, at 4,170,485 to 4,171,222
ccmC
NIAGMN_21060: ccmD - heme exporter protein CcmD, at 4,171,219 to 4,171,428
ccmD
NIAGMN_21065: ccmE - cytochrome c maturation protein CcmE, at 4,171,425 to 4,171,904
ccmE
Position (kb) 4169
4170
4171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4168.866 kb on + strand, within napC at 4168.866 kb on + strand, within napC at 4168.866 kb on + strand, within napC at 4168.866 kb on + strand, within napC at 4168.867 kb on - strand, within napC at 4168.867 kb on - strand, within napC at 4168.876 kb on + strand, within napC at 4168.971 kb on + strand, within napC at 4168.971 kb on + strand, within napC at 4168.971 kb on + strand, within napC at 4168.989 kb on + strand, within napC at 4168.989 kb on + strand, within napC at 4169.010 kb on + strand, within napC at 4169.010 kb on + strand, within napC at 4169.010 kb on + strand, within napC at 4169.016 kb on + strand, within napC at 4169.016 kb on + strand, within napC at 4169.016 kb on + strand, within napC at 4169.213 kb on + strand at 4169.213 kb on + strand at 4169.217 kb on + strand at 4169.217 kb on + strand at 4169.269 kb on - strand, within ccmA at 4169.380 kb on + strand, within ccmA at 4169.380 kb on + strand, within ccmA at 4169.380 kb on + strand, within ccmA at 4169.530 kb on - strand, within ccmA at 4169.671 kb on - strand, within ccmA at 4169.683 kb on - strand, within ccmA at 4169.873 kb on - strand, within ccmB at 4169.873 kb on - strand, within ccmB at 4169.873 kb on - strand, within ccmB at 4169.873 kb on - strand, within ccmB at 4169.925 kb on - strand, within ccmB at 4169.925 kb on - strand, within ccmB at 4169.925 kb on - strand, within ccmB at 4169.939 kb on + strand, within ccmB at 4170.103 kb on + strand, within ccmB at 4170.124 kb on + strand, within ccmB at 4170.150 kb on + strand, within ccmB at 4170.242 kb on + strand, within ccmB at 4170.243 kb on - strand, within ccmB at 4170.332 kb on + strand, within ccmB at 4170.332 kb on + strand, within ccmB at 4170.397 kb on + strand at 4170.398 kb on - strand at 4170.424 kb on + strand at 4170.484 kb on + strand at 4170.484 kb on + strand at 4170.484 kb on + strand at 4170.485 kb on - strand at 4170.547 kb on + strand at 4170.627 kb on - strand, within ccmC at 4170.640 kb on + strand, within ccmC at 4170.640 kb on + strand, within ccmC at 4170.640 kb on + strand, within ccmC at 4170.652 kb on + strand, within ccmC at 4170.652 kb on + strand, within ccmC at 4170.656 kb on + strand, within ccmC at 4170.656 kb on + strand, within ccmC at 4170.656 kb on + strand, within ccmC at 4170.695 kb on + strand, within ccmC at 4170.695 kb on + strand, within ccmC at 4170.695 kb on + strand, within ccmC at 4170.695 kb on + strand, within ccmC at 4170.696 kb on - strand, within ccmC at 4170.696 kb on - strand, within ccmC at 4170.899 kb on + strand, within ccmC at 4170.899 kb on + strand, within ccmC
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,168,866 + napC NIAGMN_21040 0.53 -0.8 4,168,866 + napC NIAGMN_21040 0.53 -0.5 4,168,866 + napC NIAGMN_21040 0.53 -0.1 4,168,866 + napC NIAGMN_21040 0.53 +0.3 4,168,867 - napC NIAGMN_21040 0.53 +0.1 4,168,867 - napC NIAGMN_21040 0.53 -1.3 4,168,876 + napC NIAGMN_21040 0.55 +2.3 4,168,971 + napC NIAGMN_21040 0.70 +0.1 4,168,971 + napC NIAGMN_21040 0.70 +0.3 4,168,971 + napC NIAGMN_21040 0.70 +1.1 4,168,989 + napC NIAGMN_21040 0.73 +0.3 4,168,989 + napC NIAGMN_21040 0.73 -1.0 4,169,010 + napC NIAGMN_21040 0.77 +0.4 4,169,010 + napC NIAGMN_21040 0.77 +0.6 4,169,010 + napC NIAGMN_21040 0.77 -2.8 4,169,016 + napC NIAGMN_21040 0.78 -0.5 4,169,016 + napC NIAGMN_21040 0.78 -0.6 4,169,016 + napC NIAGMN_21040 0.78 -1.6 4,169,213 + -0.3 4,169,213 + -1.7 4,169,217 + -0.4 4,169,217 + -0.2 4,169,269 - ccmA NIAGMN_21045 0.17 +0.7 4,169,380 + ccmA NIAGMN_21045 0.34 +0.5 4,169,380 + ccmA NIAGMN_21045 0.34 -0.3 4,169,380 + ccmA NIAGMN_21045 0.34 +0.8 4,169,530 - ccmA NIAGMN_21045 0.59 +1.0 4,169,671 - ccmA NIAGMN_21045 0.82 +0.4 4,169,683 - ccmA NIAGMN_21045 0.83 -1.9 4,169,873 - ccmB NIAGMN_21050 0.14 +0.9 4,169,873 - ccmB NIAGMN_21050 0.14 -1.8 4,169,873 - ccmB NIAGMN_21050 0.14 +0.6 4,169,873 - ccmB NIAGMN_21050 0.14 +0.0 4,169,925 - ccmB NIAGMN_21050 0.22 +0.1 4,169,925 - ccmB NIAGMN_21050 0.22 -0.4 4,169,925 - ccmB NIAGMN_21050 0.22 -1.0 4,169,939 + ccmB NIAGMN_21050 0.24 -2.0 4,170,103 + ccmB NIAGMN_21050 0.49 -0.6 4,170,124 + ccmB NIAGMN_21050 0.52 +0.4 4,170,150 + ccmB NIAGMN_21050 0.56 +1.8 4,170,242 + ccmB NIAGMN_21050 0.70 -0.7 4,170,243 - ccmB NIAGMN_21050 0.70 +0.4 4,170,332 + ccmB NIAGMN_21050 0.83 +1.8 4,170,332 + ccmB NIAGMN_21050 0.83 -1.8 4,170,397 + +0.5 4,170,398 - -0.4 4,170,424 + -0.9 4,170,484 + +1.2 4,170,484 + +0.5 4,170,484 + -0.4 4,170,485 - +0.2 4,170,547 + +0.3 4,170,627 - ccmC NIAGMN_21055 0.19 +0.3 4,170,640 + ccmC NIAGMN_21055 0.21 -0.0 4,170,640 + ccmC NIAGMN_21055 0.21 +1.9 4,170,640 + ccmC NIAGMN_21055 0.21 -0.2 4,170,652 + ccmC NIAGMN_21055 0.23 +0.5 4,170,652 + ccmC NIAGMN_21055 0.23 -1.7 4,170,656 + ccmC NIAGMN_21055 0.23 -1.7 4,170,656 + ccmC NIAGMN_21055 0.23 -0.0 4,170,656 + ccmC NIAGMN_21055 0.23 -0.4 4,170,695 + ccmC NIAGMN_21055 0.28 +0.6 4,170,695 + ccmC NIAGMN_21055 0.28 +0.0 4,170,695 + ccmC NIAGMN_21055 0.28 +1.0 4,170,695 + ccmC NIAGMN_21055 0.28 -0.9 4,170,696 - ccmC NIAGMN_21055 0.29 -0.6 4,170,696 - ccmC NIAGMN_21055 0.29 +1.9 4,170,899 + ccmC NIAGMN_21055 0.56 +0.2 4,170,899 + ccmC NIAGMN_21055 0.56 +1.4
Or see this region's nucleotide sequence