Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napH and napH overlap by 4 nucleotides napH and napC are separated by 9 nucleotides napC and ccmA are separated by 18 nucleotides ccmA and ccmB overlap by 4 nucleotides
NIAGMN_21030: napH - quinol dehydrogenase ferredoxin subunit NapH, at 4,167,227 to 4,168,090
napH
NIAGMN_21035: napH - quinol dehydrogenase ferredoxin subunit NapH, at 4,168,087 to 4,168,536
napH
NIAGMN_21040: napC - cytochrome c-type protein NapC, at 4,168,546 to 4,169,148
napC
NIAGMN_21045: ccmA - cytochrome c biogenesis heme-transporting ATPase CcmA, at 4,169,167 to 4,169,784
ccmA
NIAGMN_21050: ccmB - heme exporter protein CcmB, at 4,169,781 to 4,170,443
ccmB
Position (kb) 4168
4169
4170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4167.642 kb on - strand, within napH at 4167.739 kb on - strand, within napH at 4167.766 kb on + strand, within napH at 4167.845 kb on + strand, within napH at 4167.845 kb on + strand, within napH at 4167.913 kb on + strand, within napH at 4167.951 kb on + strand, within napH at 4167.951 kb on + strand, within napH at 4168.047 kb on + strand at 4168.047 kb on + strand at 4168.047 kb on + strand at 4168.047 kb on + strand at 4168.047 kb on + strand at 4168.052 kb on - strand at 4168.056 kb on + strand at 4168.060 kb on + strand at 4168.060 kb on + strand at 4168.264 kb on + strand, within napH at 4168.264 kb on + strand, within napH at 4168.393 kb on - strand, within napH at 4168.402 kb on - strand, within napH at 4168.448 kb on - strand, within napH at 4168.470 kb on - strand, within napH at 4168.535 kb on - strand at 4168.542 kb on + strand at 4168.543 kb on - strand at 4168.543 kb on - strand at 4168.563 kb on + strand at 4168.677 kb on + strand, within napC at 4168.719 kb on + strand, within napC at 4168.719 kb on + strand, within napC at 4168.720 kb on - strand, within napC at 4168.757 kb on - strand, within napC at 4168.866 kb on + strand, within napC at 4168.866 kb on + strand, within napC at 4168.866 kb on + strand, within napC at 4168.866 kb on + strand, within napC at 4168.867 kb on - strand, within napC at 4168.867 kb on - strand, within napC at 4168.876 kb on + strand, within napC at 4168.971 kb on + strand, within napC at 4168.971 kb on + strand, within napC at 4168.971 kb on + strand, within napC at 4168.989 kb on + strand, within napC at 4168.989 kb on + strand, within napC at 4169.010 kb on + strand, within napC at 4169.010 kb on + strand, within napC at 4169.010 kb on + strand, within napC at 4169.016 kb on + strand, within napC at 4169.016 kb on + strand, within napC at 4169.016 kb on + strand, within napC at 4169.213 kb on + strand at 4169.213 kb on + strand at 4169.217 kb on + strand at 4169.217 kb on + strand at 4169.269 kb on - strand, within ccmA at 4169.380 kb on + strand, within ccmA at 4169.380 kb on + strand, within ccmA at 4169.380 kb on + strand, within ccmA at 4169.530 kb on - strand, within ccmA at 4169.671 kb on - strand, within ccmA at 4169.683 kb on - strand, within ccmA at 4169.873 kb on - strand, within ccmB at 4169.873 kb on - strand, within ccmB at 4169.873 kb on - strand, within ccmB at 4169.873 kb on - strand, within ccmB at 4169.925 kb on - strand, within ccmB at 4169.925 kb on - strand, within ccmB at 4169.925 kb on - strand, within ccmB at 4169.939 kb on + strand, within ccmB at 4170.103 kb on + strand, within ccmB at 4170.124 kb on + strand, within ccmB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,167,642 - napH NIAGMN_21030 0.48 -3.4 4,167,739 - napH NIAGMN_21030 0.59 -2.6 4,167,766 + napH NIAGMN_21030 0.62 +0.9 4,167,845 + napH NIAGMN_21030 0.72 -0.1 4,167,845 + napH NIAGMN_21030 0.72 +0.4 4,167,913 + napH NIAGMN_21030 0.79 -0.4 4,167,951 + napH NIAGMN_21030 0.84 +0.8 4,167,951 + napH NIAGMN_21030 0.84 +0.1 4,168,047 + -0.4 4,168,047 + -0.3 4,168,047 + -1.1 4,168,047 + -0.7 4,168,047 + +0.0 4,168,052 - -2.3 4,168,056 + +0.6 4,168,060 + +1.1 4,168,060 + -0.5 4,168,264 + napH NIAGMN_21035 0.39 -1.1 4,168,264 + napH NIAGMN_21035 0.39 -0.9 4,168,393 - napH NIAGMN_21035 0.68 -0.9 4,168,402 - napH NIAGMN_21035 0.70 -1.0 4,168,448 - napH NIAGMN_21035 0.80 +0.2 4,168,470 - napH NIAGMN_21035 0.85 +1.2 4,168,535 - -2.3 4,168,542 + -1.1 4,168,543 - -0.7 4,168,543 - +1.4 4,168,563 + -0.5 4,168,677 + napC NIAGMN_21040 0.22 +1.1 4,168,719 + napC NIAGMN_21040 0.29 +1.0 4,168,719 + napC NIAGMN_21040 0.29 +2.0 4,168,720 - napC NIAGMN_21040 0.29 -1.3 4,168,757 - napC NIAGMN_21040 0.35 -2.3 4,168,866 + napC NIAGMN_21040 0.53 -0.8 4,168,866 + napC NIAGMN_21040 0.53 -0.5 4,168,866 + napC NIAGMN_21040 0.53 -0.1 4,168,866 + napC NIAGMN_21040 0.53 +0.3 4,168,867 - napC NIAGMN_21040 0.53 +0.1 4,168,867 - napC NIAGMN_21040 0.53 -1.3 4,168,876 + napC NIAGMN_21040 0.55 +2.3 4,168,971 + napC NIAGMN_21040 0.70 +0.1 4,168,971 + napC NIAGMN_21040 0.70 +0.3 4,168,971 + napC NIAGMN_21040 0.70 +1.1 4,168,989 + napC NIAGMN_21040 0.73 +0.3 4,168,989 + napC NIAGMN_21040 0.73 -1.0 4,169,010 + napC NIAGMN_21040 0.77 +0.4 4,169,010 + napC NIAGMN_21040 0.77 +0.6 4,169,010 + napC NIAGMN_21040 0.77 -2.8 4,169,016 + napC NIAGMN_21040 0.78 -0.5 4,169,016 + napC NIAGMN_21040 0.78 -0.6 4,169,016 + napC NIAGMN_21040 0.78 -1.6 4,169,213 + -0.3 4,169,213 + -1.7 4,169,217 + -0.4 4,169,217 + -0.2 4,169,269 - ccmA NIAGMN_21045 0.17 +0.7 4,169,380 + ccmA NIAGMN_21045 0.34 +0.5 4,169,380 + ccmA NIAGMN_21045 0.34 -0.3 4,169,380 + ccmA NIAGMN_21045 0.34 +0.8 4,169,530 - ccmA NIAGMN_21045 0.59 +1.0 4,169,671 - ccmA NIAGMN_21045 0.82 +0.4 4,169,683 - ccmA NIAGMN_21045 0.83 -1.9 4,169,873 - ccmB NIAGMN_21050 0.14 +0.9 4,169,873 - ccmB NIAGMN_21050 0.14 -1.8 4,169,873 - ccmB NIAGMN_21050 0.14 +0.6 4,169,873 - ccmB NIAGMN_21050 0.14 +0.0 4,169,925 - ccmB NIAGMN_21050 0.22 +0.1 4,169,925 - ccmB NIAGMN_21050 0.22 -0.4 4,169,925 - ccmB NIAGMN_21050 0.22 -1.0 4,169,939 + ccmB NIAGMN_21050 0.24 -2.0 4,170,103 + ccmB NIAGMN_21050 0.49 -0.6 4,170,124 + ccmB NIAGMN_21050 0.52 +0.4
Or see this region's nucleotide sequence