Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fadJ and sixA are separated by 202 nucleotides sixA and fimA are separated by 645 nucleotides
NIAGMN_20335: fadJ - fatty acid oxidation complex subunit alpha FadJ, at 4,016,098 to 4,018,242
fadJ
NIAGMN_20340: sixA - phosphohistidine phosphatase SixA, at 4,018,445 to 4,018,930
sixA
NIAGMN_20345: fimA - fimbrial protein, at 4,019,576 to 4,020,139
fimA
Position (kb)
4018
4019 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4017.475 kb on - strand, within fadJ at 4017.475 kb on - strand, within fadJ at 4017.490 kb on - strand, within fadJ at 4017.577 kb on + strand, within fadJ at 4017.593 kb on + strand, within fadJ at 4017.593 kb on + strand, within fadJ at 4017.601 kb on + strand, within fadJ at 4017.601 kb on + strand, within fadJ at 4017.607 kb on - strand, within fadJ at 4017.713 kb on + strand, within fadJ at 4017.853 kb on + strand, within fadJ at 4017.870 kb on + strand, within fadJ at 4017.871 kb on - strand, within fadJ at 4017.989 kb on + strand, within fadJ at 4017.989 kb on + strand, within fadJ at 4017.989 kb on + strand, within fadJ at 4018.090 kb on + strand at 4018.091 kb on - strand at 4018.150 kb on + strand at 4018.150 kb on + strand at 4018.165 kb on - strand at 4018.241 kb on - strand at 4018.255 kb on + strand at 4018.256 kb on - strand at 4018.257 kb on + strand at 4018.258 kb on - strand at 4018.313 kb on + strand at 4018.313 kb on + strand at 4018.313 kb on + strand at 4018.313 kb on + strand at 4018.314 kb on - strand at 4018.317 kb on + strand at 4018.800 kb on + strand, within sixA at 4018.822 kb on + strand, within sixA at 4018.924 kb on + strand at 4019.466 kb on + strand at 4019.616 kb on + strand at 4019.785 kb on + strand, within fimA at 4019.852 kb on - strand, within fimA at 4019.894 kb on + strand, within fimA at 4019.894 kb on + strand, within fimA at 4019.894 kb on + strand, within fimA at 4019.929 kb on + strand, within fimA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,017,475 - fadJ NIAGMN_20335 0.64 -0.4 4,017,475 - fadJ NIAGMN_20335 0.64 +0.1 4,017,490 - fadJ NIAGMN_20335 0.65 -1.1 4,017,577 + fadJ NIAGMN_20335 0.69 -0.1 4,017,593 + fadJ NIAGMN_20335 0.70 -0.2 4,017,593 + fadJ NIAGMN_20335 0.70 -2.2 4,017,601 + fadJ NIAGMN_20335 0.70 +0.9 4,017,601 + fadJ NIAGMN_20335 0.70 -0.4 4,017,607 - fadJ NIAGMN_20335 0.70 -1.4 4,017,713 + fadJ NIAGMN_20335 0.75 +1.5 4,017,853 + fadJ NIAGMN_20335 0.82 +0.6 4,017,870 + fadJ NIAGMN_20335 0.83 -0.7 4,017,871 - fadJ NIAGMN_20335 0.83 +3.1 4,017,989 + fadJ NIAGMN_20335 0.88 +0.5 4,017,989 + fadJ NIAGMN_20335 0.88 -2.6 4,017,989 + fadJ NIAGMN_20335 0.88 -0.4 4,018,090 + -1.3 4,018,091 - -1.3 4,018,150 + -0.6 4,018,150 + +0.0 4,018,165 - +2.7 4,018,241 - -0.5 4,018,255 + +1.0 4,018,256 - +0.6 4,018,257 + -1.7 4,018,258 - -1.4 4,018,313 + -0.3 4,018,313 + -1.7 4,018,313 + -3.4 4,018,313 + -2.3 4,018,314 - -1.9 4,018,317 + -1.8 4,018,800 + sixA NIAGMN_20340 0.73 +2.1 4,018,822 + sixA NIAGMN_20340 0.78 -1.7 4,018,924 + -0.2 4,019,466 + +0.9 4,019,616 + +1.9 4,019,785 + fimA NIAGMN_20345 0.37 -1.1 4,019,852 - fimA NIAGMN_20345 0.49 +0.3 4,019,894 + fimA NIAGMN_20345 0.56 +1.4 4,019,894 + fimA NIAGMN_20345 0.56 -0.6 4,019,894 + fimA NIAGMN_20345 0.56 -0.3 4,019,929 + fimA NIAGMN_20345 0.63 -0.8
Or see this region's nucleotide sequence