Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt evgA and evgL overlap by 4 nucleotides evgL and emrK are separated by 389 nucleotides emrK and emrY overlap by 1 nucleotides
NIAGMN_20205: evgA - acid-sensing system DNA-binding response regulator EvgA, at 3,989,166 to 3,989,780
evgA
NIAGMN_20210: evgL - Protein EvgL, at 3,989,777 to 3,989,806
evgL
NIAGMN_20215: emrK - multidrug efflux MFS transporter periplasmic adaptor subunit EmrK, at 3,990,196 to 3,991,359
emrK
NIAGMN_20220: emrY - multidrug efflux MFS transporter permease subunit EmrY, at 3,991,359 to 3,992,897
emrY
Position (kb)
3990
3991
3992 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3989.247 kb on - strand, within evgA at 3989.249 kb on - strand, within evgA at 3989.319 kb on - strand, within evgA at 3989.319 kb on - strand, within evgA at 3989.417 kb on - strand, within evgA at 3989.457 kb on - strand, within evgA at 3989.552 kb on + strand, within evgA at 3989.648 kb on + strand, within evgA at 3989.903 kb on + strand at 3989.904 kb on - strand at 3990.289 kb on + strand at 3990.324 kb on + strand, within emrK at 3990.547 kb on + strand, within emrK at 3990.602 kb on - strand, within emrK at 3990.677 kb on + strand, within emrK at 3990.828 kb on + strand, within emrK at 3990.828 kb on + strand, within emrK at 3990.847 kb on + strand, within emrK at 3990.848 kb on - strand, within emrK at 3990.971 kb on + strand, within emrK at 3990.971 kb on + strand, within emrK at 3990.996 kb on + strand, within emrK at 3991.079 kb on + strand, within emrK at 3991.207 kb on - strand, within emrK at 3992.189 kb on + strand, within emrY at 3992.251 kb on + strand, within emrY at 3992.273 kb on + strand, within emrY
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 3,989,247 - evgA NIAGMN_20205 0.13 -0.0 3,989,249 - evgA NIAGMN_20205 0.13 +0.2 3,989,319 - evgA NIAGMN_20205 0.25 -0.3 3,989,319 - evgA NIAGMN_20205 0.25 +0.5 3,989,417 - evgA NIAGMN_20205 0.41 +0.4 3,989,457 - evgA NIAGMN_20205 0.47 -0.6 3,989,552 + evgA NIAGMN_20205 0.63 -1.9 3,989,648 + evgA NIAGMN_20205 0.78 -1.1 3,989,903 + +1.7 3,989,904 - +0.4 3,990,289 + -0.8 3,990,324 + emrK NIAGMN_20215 0.11 -2.8 3,990,547 + emrK NIAGMN_20215 0.30 -2.4 3,990,602 - emrK NIAGMN_20215 0.35 -1.6 3,990,677 + emrK NIAGMN_20215 0.41 -1.6 3,990,828 + emrK NIAGMN_20215 0.54 -2.5 3,990,828 + emrK NIAGMN_20215 0.54 +0.1 3,990,847 + emrK NIAGMN_20215 0.56 +0.7 3,990,848 - emrK NIAGMN_20215 0.56 +0.5 3,990,971 + emrK NIAGMN_20215 0.67 +0.8 3,990,971 + emrK NIAGMN_20215 0.67 +0.7 3,990,996 + emrK NIAGMN_20215 0.69 -0.8 3,991,079 + emrK NIAGMN_20215 0.76 -0.3 3,991,207 - emrK NIAGMN_20215 0.87 -0.3 3,992,189 + emrY NIAGMN_20220 0.54 -0.6 3,992,251 + emrY NIAGMN_20220 0.58 +0.3 3,992,273 + emrY NIAGMN_20220 0.59 -0.0
Or see this region's nucleotide sequence