Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pta and eutM overlap by 4 nucleotides eutM and eutN are separated by 106 nucleotides eutN and eutE are separated by 11 nucleotides
NIAGMN_19800: pta - phosphate acetyltransferase, at 3,911,970 to 3,912,986
pta
NIAGMN_19805: eutM - ethanolamine utilization microcompartment protein EutM, at 3,912,983 to 3,913,318
eutM
NIAGMN_19810: eutN - ethanolamine utilization microcompartment protein EutN, at 3,913,425 to 3,913,712
eutN
NIAGMN_19815: eutE - Acetaldehyde dehydrogenase (acetylating) EutE, at 3,913,724 to 3,915,127
eutE
Position (kb)
3913
3914 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3912.438 kb on + strand, within pta at 3912.791 kb on + strand, within pta at 3912.792 kb on - strand, within pta at 3912.792 kb on - strand, within pta at 3912.847 kb on + strand, within pta at 3912.847 kb on + strand, within pta at 3912.847 kb on + strand, within pta at 3912.847 kb on + strand, within pta at 3912.848 kb on - strand, within pta at 3912.848 kb on - strand, within pta at 3912.848 kb on - strand, within pta at 3912.890 kb on + strand at 3912.890 kb on + strand at 3912.890 kb on + strand at 3912.890 kb on + strand at 3912.891 kb on - strand at 3912.891 kb on - strand at 3912.891 kb on - strand at 3912.891 kb on - strand at 3912.891 kb on - strand at 3913.035 kb on + strand, within eutM at 3913.147 kb on + strand, within eutM at 3913.233 kb on + strand, within eutM at 3913.239 kb on + strand, within eutM at 3913.239 kb on + strand, within eutM at 3913.239 kb on + strand, within eutM at 3913.369 kb on + strand at 3913.407 kb on + strand at 3913.408 kb on - strand at 3913.465 kb on + strand, within eutN at 3913.465 kb on + strand, within eutN at 3913.697 kb on - strand at 3913.710 kb on + strand at 3913.738 kb on + strand at 3913.761 kb on + strand at 3913.896 kb on + strand, within eutE at 3914.149 kb on - strand, within eutE at 3914.152 kb on + strand, within eutE at 3914.153 kb on - strand, within eutE at 3914.294 kb on - strand, within eutE at 3914.385 kb on + strand, within eutE at 3914.385 kb on + strand, within eutE at 3914.544 kb on + strand, within eutE
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 3,912,438 + pta NIAGMN_19800 0.46 -0.0 3,912,791 + pta NIAGMN_19800 0.81 -2.1 3,912,792 - pta NIAGMN_19800 0.81 -0.0 3,912,792 - pta NIAGMN_19800 0.81 +2.9 3,912,847 + pta NIAGMN_19800 0.86 +1.1 3,912,847 + pta NIAGMN_19800 0.86 -1.7 3,912,847 + pta NIAGMN_19800 0.86 +1.9 3,912,847 + pta NIAGMN_19800 0.86 -0.1 3,912,848 - pta NIAGMN_19800 0.86 -2.7 3,912,848 - pta NIAGMN_19800 0.86 -0.9 3,912,848 - pta NIAGMN_19800 0.86 +0.2 3,912,890 + +0.2 3,912,890 + -2.0 3,912,890 + +1.2 3,912,890 + -1.7 3,912,891 - -0.1 3,912,891 - -2.7 3,912,891 - +0.0 3,912,891 - -0.6 3,912,891 - -1.2 3,913,035 + eutM NIAGMN_19805 0.15 -0.3 3,913,147 + eutM NIAGMN_19805 0.49 -2.4 3,913,233 + eutM NIAGMN_19805 0.74 -0.2 3,913,239 + eutM NIAGMN_19805 0.76 +0.8 3,913,239 + eutM NIAGMN_19805 0.76 -1.3 3,913,239 + eutM NIAGMN_19805 0.76 +0.6 3,913,369 + +0.3 3,913,407 + -0.1 3,913,408 - +0.6 3,913,465 + eutN NIAGMN_19810 0.14 +0.5 3,913,465 + eutN NIAGMN_19810 0.14 -1.2 3,913,697 - -1.6 3,913,710 + -0.8 3,913,738 + +1.4 3,913,761 + +0.1 3,913,896 + eutE NIAGMN_19815 0.12 -0.6 3,914,149 - eutE NIAGMN_19815 0.30 -0.4 3,914,152 + eutE NIAGMN_19815 0.30 +0.2 3,914,153 - eutE NIAGMN_19815 0.31 -0.7 3,914,294 - eutE NIAGMN_19815 0.41 +1.7 3,914,385 + eutE NIAGMN_19815 0.47 +0.9 3,914,385 + eutE NIAGMN_19815 0.47 -0.5 3,914,544 + eutE NIAGMN_19815 0.58 +0.3
Or see this region's nucleotide sequence