Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18710

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIle2_trna and NIAGMN_18710 are separated by 751 nucleotidesNIAGMN_18710 and ypjA are separated by 935 nucleotides NIAGMN_18705: Ile2_trna - tRNA-Ile2(cat), at 3,693,651 to 3,693,726 _trna NIAGMN_18710: NIAGMN_18710 - DUF5508 domain-containing protein, at 3,694,478 to 3,695,827 _18710 NIAGMN_18715: ypjA - adhesin-like autotransporter YpjA/EhaD, at 3,696,763 to 3,701,349 ypjA Position (kb) 3694 3695 3696Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3693.546 kb on + strandat 3693.547 kb on - strandat 3693.598 kb on + strandat 3693.614 kb on - strandat 3693.627 kb on + strandat 3693.631 kb on + strandat 3693.631 kb on + strandat 3693.631 kb on + strandat 3693.631 kb on + strandat 3693.644 kb on + strandat 3693.648 kb on + strandat 3693.649 kb on - strandat 3693.878 kb on + strandat 3693.964 kb on + strandat 3693.965 kb on - strandat 3694.089 kb on - strandat 3694.149 kb on - strandat 3695.017 kb on + strand, within NIAGMN_18710at 3695.611 kb on + strand, within NIAGMN_18710at 3695.823 kb on + strandat 3695.888 kb on + strandat 3695.901 kb on + strandat 3695.901 kb on + strandat 3695.961 kb on + strandat 3695.979 kb on + strandat 3696.061 kb on + strandat 3696.061 kb on + strandat 3696.083 kb on + strandat 3696.118 kb on + strandat 3696.127 kb on + strandat 3696.182 kb on + strandat 3696.250 kb on - strandat 3696.250 kb on - strandat 3696.280 kb on + strandat 3696.281 kb on - strandat 3696.444 kb on + strandat 3696.511 kb on + strandat 3696.644 kb on + strandat 3696.644 kb on + strandat 3696.714 kb on - strandat 3696.737 kb on + strandat 3696.784 kb on + strandat 3696.784 kb on + strandat 3696.815 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,693,546 + +0.8
3,693,547 - +1.0
3,693,598 + +0.1
3,693,614 - +1.5
3,693,627 + +0.8
3,693,631 + -0.5
3,693,631 + +0.9
3,693,631 + -3.6
3,693,631 + +0.2
3,693,644 + +1.6
3,693,648 + -0.7
3,693,649 - +2.7
3,693,878 + -1.9
3,693,964 + +0.7
3,693,965 - -1.0
3,694,089 - +0.9
3,694,149 - +0.3
3,695,017 + NIAGMN_18710 0.40 -0.8
3,695,611 + NIAGMN_18710 0.84 -0.3
3,695,823 + +1.0
3,695,888 + -0.5
3,695,901 + -0.6
3,695,901 + -0.0
3,695,961 + -0.2
3,695,979 + -0.6
3,696,061 + +1.4
3,696,061 + +0.2
3,696,083 + +0.2
3,696,118 + -0.5
3,696,127 + +1.5
3,696,182 + -1.4
3,696,250 - -1.3
3,696,250 - +0.1
3,696,280 + -0.6
3,696,281 - +0.6
3,696,444 + +1.1
3,696,511 + +0.7
3,696,644 + -2.0
3,696,644 + +1.0
3,696,714 - +0.1
3,696,737 + -0.7
3,696,784 + -1.1
3,696,784 + -0.6
3,696,815 + -0.1

Or see this region's nucleotide sequence