Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_14355 and NIAGMN_14360 overlap by 32 nucleotides NIAGMN_14360 and fadM overlap by 4 nucleotides fadM and NIAGMN_14370 are separated by 3 nucleotides
NIAGMN_14355: NIAGMN_14355 - Conserved integral membrane protein, at 2,858,330 to 2,860,648
_14355
NIAGMN_14360: NIAGMN_14360 - Outer membrane lipoprotein carrier protein LolA, at 2,860,617 to 2,861,222
_14360
NIAGMN_14365: fadM - 4-hydroxybenzoyl-CoA thioesterase, at 2,861,219 to 2,861,641
fadM
NIAGMN_14370: NIAGMN_14370 - acyltransferase, at 2,861,645 to 2,863,321
_14370
Position (kb)
2861
2862 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2860.349 kb on - strand, within NIAGMN_14355 at 2860.465 kb on + strand at 2860.466 kb on - strand at 2860.466 kb on - strand at 2860.519 kb on + strand at 2860.520 kb on - strand at 2860.520 kb on - strand at 2860.520 kb on - strand at 2860.520 kb on - strand at 2860.532 kb on - strand at 2860.532 kb on - strand at 2860.532 kb on - strand at 2860.592 kb on + strand at 2860.712 kb on + strand, within NIAGMN_14360 at 2860.713 kb on - strand, within NIAGMN_14360 at 2860.713 kb on - strand, within NIAGMN_14360 at 2860.713 kb on - strand, within NIAGMN_14360 at 2860.719 kb on - strand, within NIAGMN_14360 at 2860.739 kb on - strand, within NIAGMN_14360 at 2860.904 kb on + strand, within NIAGMN_14360 at 2860.905 kb on - strand, within NIAGMN_14360 at 2860.993 kb on - strand, within NIAGMN_14360 at 2860.993 kb on - strand, within NIAGMN_14360 at 2860.995 kb on + strand, within NIAGMN_14360 at 2860.995 kb on + strand, within NIAGMN_14360 at 2860.995 kb on + strand, within NIAGMN_14360 at 2860.995 kb on + strand, within NIAGMN_14360 at 2860.996 kb on - strand, within NIAGMN_14360 at 2860.996 kb on - strand, within NIAGMN_14360 at 2860.996 kb on - strand, within NIAGMN_14360 at 2860.996 kb on - strand, within NIAGMN_14360 at 2860.996 kb on - strand, within NIAGMN_14360 at 2861.094 kb on - strand, within NIAGMN_14360 at 2861.310 kb on + strand, within fadM at 2861.437 kb on - strand, within fadM at 2861.500 kb on - strand, within fadM at 2861.500 kb on - strand, within fadM at 2861.541 kb on + strand, within fadM at 2861.550 kb on + strand, within fadM at 2861.551 kb on - strand, within fadM at 2861.578 kb on + strand, within fadM at 2861.579 kb on - strand, within fadM at 2861.646 kb on + strand at 2861.647 kb on - strand at 2861.647 kb on - strand at 2861.721 kb on + strand at 2861.721 kb on + strand at 2861.722 kb on - strand at 2861.722 kb on - strand at 2861.742 kb on + strand at 2861.824 kb on + strand, within NIAGMN_14370 at 2861.893 kb on + strand, within NIAGMN_14370 at 2861.930 kb on - strand, within NIAGMN_14370 at 2861.930 kb on - strand, within NIAGMN_14370 at 2862.110 kb on + strand, within NIAGMN_14370 at 2862.110 kb on + strand, within NIAGMN_14370 at 2862.110 kb on + strand, within NIAGMN_14370 at 2862.111 kb on - strand, within NIAGMN_14370 at 2862.111 kb on - strand, within NIAGMN_14370 at 2862.154 kb on + strand, within NIAGMN_14370 at 2862.155 kb on - strand, within NIAGMN_14370 at 2862.165 kb on + strand, within NIAGMN_14370 at 2862.166 kb on - strand, within NIAGMN_14370 at 2862.302 kb on + strand, within NIAGMN_14370 at 2862.303 kb on - strand, within NIAGMN_14370 at 2862.353 kb on + strand, within NIAGMN_14370 at 2862.354 kb on - strand, within NIAGMN_14370 at 2862.354 kb on - strand, within NIAGMN_14370 at 2862.354 kb on - strand, within NIAGMN_14370 at 2862.366 kb on + strand, within NIAGMN_14370 at 2862.366 kb on + strand, within NIAGMN_14370 at 2862.366 kb on + strand, within NIAGMN_14370 at 2862.366 kb on + strand, within NIAGMN_14370 at 2862.366 kb on + strand, within NIAGMN_14370 at 2862.366 kb on + strand, within NIAGMN_14370 at 2862.367 kb on - strand, within NIAGMN_14370 at 2862.367 kb on - strand, within NIAGMN_14370 at 2862.367 kb on - strand, within NIAGMN_14370 at 2862.405 kb on - strand, within NIAGMN_14370 at 2862.460 kb on - strand, within NIAGMN_14370 at 2862.545 kb on + strand, within NIAGMN_14370 at 2862.545 kb on + strand, within NIAGMN_14370 at 2862.546 kb on - strand, within NIAGMN_14370 at 2862.611 kb on - strand, within NIAGMN_14370
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,860,349 - NIAGMN_14355 0.87 +0.1 2,860,465 + -1.3 2,860,466 - -0.6 2,860,466 - -0.4 2,860,519 + +1.6 2,860,520 - -0.0 2,860,520 - -0.5 2,860,520 - +0.0 2,860,520 - +1.3 2,860,532 - +0.3 2,860,532 - -0.4 2,860,532 - -0.5 2,860,592 + -1.1 2,860,712 + NIAGMN_14360 0.16 -0.1 2,860,713 - NIAGMN_14360 0.16 -0.6 2,860,713 - NIAGMN_14360 0.16 -0.6 2,860,713 - NIAGMN_14360 0.16 -1.0 2,860,719 - NIAGMN_14360 0.17 -0.0 2,860,739 - NIAGMN_14360 0.20 -0.3 2,860,904 + NIAGMN_14360 0.47 -0.8 2,860,905 - NIAGMN_14360 0.48 +0.7 2,860,993 - NIAGMN_14360 0.62 -0.6 2,860,993 - NIAGMN_14360 0.62 -0.1 2,860,995 + NIAGMN_14360 0.62 +0.4 2,860,995 + NIAGMN_14360 0.62 -1.5 2,860,995 + NIAGMN_14360 0.62 -1.9 2,860,995 + NIAGMN_14360 0.62 -0.5 2,860,996 - NIAGMN_14360 0.63 -0.6 2,860,996 - NIAGMN_14360 0.63 -0.3 2,860,996 - NIAGMN_14360 0.63 +0.5 2,860,996 - NIAGMN_14360 0.63 -0.8 2,860,996 - NIAGMN_14360 0.63 +0.0 2,861,094 - NIAGMN_14360 0.79 +1.0 2,861,310 + fadM NIAGMN_14365 0.22 +0.6 2,861,437 - fadM NIAGMN_14365 0.52 -1.5 2,861,500 - fadM NIAGMN_14365 0.66 +0.1 2,861,500 - fadM NIAGMN_14365 0.66 -0.2 2,861,541 + fadM NIAGMN_14365 0.76 -0.4 2,861,550 + fadM NIAGMN_14365 0.78 +0.4 2,861,551 - fadM NIAGMN_14365 0.78 -1.3 2,861,578 + fadM NIAGMN_14365 0.85 +1.9 2,861,579 - fadM NIAGMN_14365 0.85 -0.1 2,861,646 + -0.1 2,861,647 - +0.5 2,861,647 - +0.4 2,861,721 + -1.7 2,861,721 + -0.0 2,861,722 - -0.4 2,861,722 - +0.9 2,861,742 + -1.2 2,861,824 + NIAGMN_14370 0.11 -0.9 2,861,893 + NIAGMN_14370 0.15 +1.8 2,861,930 - NIAGMN_14370 0.17 +0.8 2,861,930 - NIAGMN_14370 0.17 +0.3 2,862,110 + NIAGMN_14370 0.28 -1.1 2,862,110 + NIAGMN_14370 0.28 -3.0 2,862,110 + NIAGMN_14370 0.28 -0.9 2,862,111 - NIAGMN_14370 0.28 +1.5 2,862,111 - NIAGMN_14370 0.28 -0.0 2,862,154 + NIAGMN_14370 0.30 -2.1 2,862,155 - NIAGMN_14370 0.30 -2.3 2,862,165 + NIAGMN_14370 0.31 -0.2 2,862,166 - NIAGMN_14370 0.31 +0.3 2,862,302 + NIAGMN_14370 0.39 -0.5 2,862,303 - NIAGMN_14370 0.39 -0.4 2,862,353 + NIAGMN_14370 0.42 -0.0 2,862,354 - NIAGMN_14370 0.42 +0.6 2,862,354 - NIAGMN_14370 0.42 +1.1 2,862,354 - NIAGMN_14370 0.42 -0.4 2,862,366 + NIAGMN_14370 0.43 +0.8 2,862,366 + NIAGMN_14370 0.43 +2.4 2,862,366 + NIAGMN_14370 0.43 +2.1 2,862,366 + NIAGMN_14370 0.43 -0.3 2,862,366 + NIAGMN_14370 0.43 -0.7 2,862,366 + NIAGMN_14370 0.43 -0.2 2,862,367 - NIAGMN_14370 0.43 +0.8 2,862,367 - NIAGMN_14370 0.43 -0.3 2,862,367 - NIAGMN_14370 0.43 +2.4 2,862,405 - NIAGMN_14370 0.45 +1.9 2,862,460 - NIAGMN_14370 0.49 -0.2 2,862,545 + NIAGMN_14370 0.54 +3.3 2,862,545 + NIAGMN_14370 0.54 -0.3 2,862,546 - NIAGMN_14370 0.54 -1.0 2,862,611 - NIAGMN_14370 0.58 +1.6
Or see this region's nucleotide sequence