Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt robA and NIAGMN_09005 overlap by 4 nucleotides NIAGMN_09005 and yjjX are separated by 51 nucleotides yjjX and trpR are separated by 146 nucleotides
NIAGMN_09000: robA - MDR efflux pump AcrAB transcriptional activator RobA, at 1,748,387 to 1,749,256
robA
NIAGMN_09005: NIAGMN_09005 - putative phosphoglycerate mutase GpmB, at 1,749,253 to 1,749,900
_09005
NIAGMN_09010: yjjX - inosine/xanthosine triphosphatase, at 1,749,952 to 1,750,464
yjjX
NIAGMN_09015: trpR - trp operon repressor, at 1,750,611 to 1,750,907
trpR
Position (kb) 1749
1750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1748.263 kb on - strand at 1748.278 kb on + strand at 1748.278 kb on + strand at 1748.293 kb on + strand at 1748.294 kb on - strand at 1748.333 kb on - strand at 1748.343 kb on + strand at 1748.381 kb on + strand at 1748.466 kb on + strand at 1748.466 kb on + strand at 1748.484 kb on - strand, within robA at 1748.499 kb on + strand, within robA at 1748.499 kb on + strand, within robA at 1748.512 kb on + strand, within robA at 1748.533 kb on + strand, within robA at 1748.533 kb on + strand, within robA at 1748.534 kb on - strand, within robA at 1748.534 kb on - strand, within robA at 1748.543 kb on + strand, within robA at 1748.544 kb on - strand, within robA at 1748.545 kb on + strand, within robA at 1748.546 kb on - strand, within robA at 1748.583 kb on + strand, within robA at 1748.651 kb on - strand, within robA at 1748.791 kb on + strand, within robA at 1748.810 kb on - strand, within robA at 1748.819 kb on + strand, within robA at 1748.819 kb on + strand, within robA at 1748.819 kb on + strand, within robA at 1748.819 kb on + strand, within robA at 1748.820 kb on - strand, within robA at 1748.820 kb on - strand, within robA at 1748.820 kb on - strand, within robA at 1748.820 kb on - strand, within robA at 1748.820 kb on - strand, within robA at 1748.954 kb on - strand, within robA at 1748.973 kb on + strand, within robA at 1748.973 kb on + strand, within robA at 1748.974 kb on - strand, within robA at 1748.974 kb on - strand, within robA at 1748.978 kb on + strand, within robA at 1748.978 kb on + strand, within robA at 1748.978 kb on + strand, within robA at 1748.978 kb on + strand, within robA at 1748.978 kb on + strand, within robA at 1748.978 kb on + strand, within robA at 1748.978 kb on + strand, within robA at 1749.014 kb on + strand, within robA at 1749.014 kb on + strand, within robA at 1749.014 kb on + strand, within robA at 1749.014 kb on + strand, within robA at 1749.015 kb on - strand, within robA at 1749.018 kb on + strand, within robA at 1749.018 kb on + strand, within robA at 1749.056 kb on + strand, within robA at 1749.056 kb on + strand, within robA at 1749.057 kb on - strand, within robA at 1749.057 kb on - strand, within robA at 1749.057 kb on - strand, within robA at 1749.057 kb on - strand, within robA at 1749.067 kb on + strand, within robA at 1749.068 kb on - strand, within robA at 1749.071 kb on + strand, within robA at 1749.071 kb on + strand, within robA at 1749.071 kb on + strand, within robA at 1749.071 kb on + strand, within robA at 1749.072 kb on - strand, within robA at 1749.072 kb on - strand, within robA at 1749.103 kb on + strand, within robA at 1749.104 kb on - strand, within robA at 1749.115 kb on - strand, within robA at 1749.117 kb on - strand, within robA at 1749.167 kb on - strand, within robA at 1749.176 kb on + strand at 1749.176 kb on + strand at 1749.177 kb on - strand at 1749.217 kb on + strand at 1749.271 kb on + strand at 1749.271 kb on + strand at 1749.271 kb on + strand at 1749.271 kb on + strand at 1749.271 kb on + strand at 1749.271 kb on + strand at 1749.271 kb on + strand at 1749.271 kb on + strand at 1749.272 kb on - strand at 1749.272 kb on - strand at 1749.366 kb on + strand, within NIAGMN_09005 at 1749.375 kb on + strand, within NIAGMN_09005 at 1749.375 kb on + strand, within NIAGMN_09005 at 1749.375 kb on + strand, within NIAGMN_09005 at 1749.375 kb on + strand, within NIAGMN_09005 at 1749.386 kb on - strand, within NIAGMN_09005 at 1749.447 kb on + strand, within NIAGMN_09005 at 1749.556 kb on - strand, within NIAGMN_09005 at 1749.556 kb on - strand, within NIAGMN_09005 at 1749.625 kb on - strand, within NIAGMN_09005 at 1749.652 kb on + strand, within NIAGMN_09005 at 1749.653 kb on - strand, within NIAGMN_09005 at 1749.653 kb on - strand, within NIAGMN_09005 at 1749.734 kb on - strand, within NIAGMN_09005 at 1749.751 kb on - strand, within NIAGMN_09005 at 1749.757 kb on - strand, within NIAGMN_09005 at 1749.757 kb on - strand, within NIAGMN_09005 at 1749.757 kb on - strand, within NIAGMN_09005 at 1749.844 kb on - strand at 1749.844 kb on - strand at 1749.883 kb on + strand at 1749.883 kb on + strand at 1749.883 kb on + strand at 1749.884 kb on - strand at 1749.887 kb on + strand at 1749.887 kb on + strand at 1749.887 kb on + strand at 1749.887 kb on + strand at 1749.888 kb on - strand at 1749.888 kb on - strand at 1749.888 kb on - strand at 1749.888 kb on - strand at 1749.888 kb on - strand at 1749.888 kb on - strand at 1749.888 kb on - strand at 1749.889 kb on + strand at 1749.889 kb on + strand at 1749.889 kb on + strand at 1749.889 kb on + strand at 1749.890 kb on - strand at 1749.890 kb on - strand at 1749.890 kb on - strand at 1749.890 kb on - strand at 1749.895 kb on + strand at 1749.913 kb on + strand at 1749.914 kb on - strand at 1749.914 kb on - strand at 1749.915 kb on + strand at 1749.916 kb on - strand at 1749.916 kb on - strand at 1749.916 kb on - strand at 1749.916 kb on - strand at 1749.916 kb on - strand at 1749.923 kb on + strand at 1749.924 kb on - strand at 1749.941 kb on + strand at 1750.044 kb on + strand, within yjjX at 1750.045 kb on - strand, within yjjX at 1750.045 kb on - strand, within yjjX at 1750.045 kb on - strand, within yjjX at 1750.145 kb on + strand, within yjjX at 1750.280 kb on + strand, within yjjX at 1750.293 kb on - strand, within yjjX at 1750.333 kb on - strand, within yjjX at 1750.333 kb on - strand, within yjjX at 1750.356 kb on + strand, within yjjX at 1750.356 kb on + strand, within yjjX at 1750.412 kb on - strand, within yjjX at 1750.412 kb on - strand, within yjjX at 1750.459 kb on + strand at 1750.459 kb on + strand at 1750.460 kb on - strand at 1750.460 kb on - strand at 1750.462 kb on + strand at 1750.596 kb on - strand at 1750.679 kb on + strand, within trpR at 1750.679 kb on + strand, within trpR at 1750.680 kb on - strand, within trpR at 1750.680 kb on - strand, within trpR at 1750.692 kb on - strand, within trpR at 1750.770 kb on - strand, within trpR at 1750.822 kb on - strand, within trpR at 1750.822 kb on - strand, within trpR at 1750.830 kb on + strand, within trpR at 1750.831 kb on - strand, within trpR
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,748,263 - +0.0 1,748,278 + -1.8 1,748,278 + +1.3 1,748,293 + -0.8 1,748,294 - +0.2 1,748,333 - +0.1 1,748,343 + -3.1 1,748,381 + -0.3 1,748,466 + +1.4 1,748,466 + +0.7 1,748,484 - robA NIAGMN_09000 0.11 -0.7 1,748,499 + robA NIAGMN_09000 0.13 -2.0 1,748,499 + robA NIAGMN_09000 0.13 +0.6 1,748,512 + robA NIAGMN_09000 0.14 +1.1 1,748,533 + robA NIAGMN_09000 0.17 +2.4 1,748,533 + robA NIAGMN_09000 0.17 +0.3 1,748,534 - robA NIAGMN_09000 0.17 +1.0 1,748,534 - robA NIAGMN_09000 0.17 -2.6 1,748,543 + robA NIAGMN_09000 0.18 +0.2 1,748,544 - robA NIAGMN_09000 0.18 -0.1 1,748,545 + robA NIAGMN_09000 0.18 +0.2 1,748,546 - robA NIAGMN_09000 0.18 +2.0 1,748,583 + robA NIAGMN_09000 0.23 +1.9 1,748,651 - robA NIAGMN_09000 0.30 +0.3 1,748,791 + robA NIAGMN_09000 0.46 +0.6 1,748,810 - robA NIAGMN_09000 0.49 +0.3 1,748,819 + robA NIAGMN_09000 0.50 -0.4 1,748,819 + robA NIAGMN_09000 0.50 -0.5 1,748,819 + robA NIAGMN_09000 0.50 +1.4 1,748,819 + robA NIAGMN_09000 0.50 -1.4 1,748,820 - robA NIAGMN_09000 0.50 -1.0 1,748,820 - robA NIAGMN_09000 0.50 -1.0 1,748,820 - robA NIAGMN_09000 0.50 +0.1 1,748,820 - robA NIAGMN_09000 0.50 +0.4 1,748,820 - robA NIAGMN_09000 0.50 -1.2 1,748,954 - robA NIAGMN_09000 0.65 +1.6 1,748,973 + robA NIAGMN_09000 0.67 +0.1 1,748,973 + robA NIAGMN_09000 0.67 -0.1 1,748,974 - robA NIAGMN_09000 0.67 -0.5 1,748,974 - robA NIAGMN_09000 0.67 +2.6 1,748,978 + robA NIAGMN_09000 0.68 -1.1 1,748,978 + robA NIAGMN_09000 0.68 +0.0 1,748,978 + robA NIAGMN_09000 0.68 -1.7 1,748,978 + robA NIAGMN_09000 0.68 +0.5 1,748,978 + robA NIAGMN_09000 0.68 +0.7 1,748,978 + robA NIAGMN_09000 0.68 -0.6 1,748,978 + robA NIAGMN_09000 0.68 -0.5 1,749,014 + robA NIAGMN_09000 0.72 -0.8 1,749,014 + robA NIAGMN_09000 0.72 +1.9 1,749,014 + robA NIAGMN_09000 0.72 +1.1 1,749,014 + robA NIAGMN_09000 0.72 +0.7 1,749,015 - robA NIAGMN_09000 0.72 -1.2 1,749,018 + robA NIAGMN_09000 0.73 +1.8 1,749,018 + robA NIAGMN_09000 0.73 -0.5 1,749,056 + robA NIAGMN_09000 0.77 -2.0 1,749,056 + robA NIAGMN_09000 0.77 -0.0 1,749,057 - robA NIAGMN_09000 0.77 -1.7 1,749,057 - robA NIAGMN_09000 0.77 -0.9 1,749,057 - robA NIAGMN_09000 0.77 -1.2 1,749,057 - robA NIAGMN_09000 0.77 -1.2 1,749,067 + robA NIAGMN_09000 0.78 -0.1 1,749,068 - robA NIAGMN_09000 0.78 +0.9 1,749,071 + robA NIAGMN_09000 0.79 -0.6 1,749,071 + robA NIAGMN_09000 0.79 +0.3 1,749,071 + robA NIAGMN_09000 0.79 -0.9 1,749,071 + robA NIAGMN_09000 0.79 +0.8 1,749,072 - robA NIAGMN_09000 0.79 -1.0 1,749,072 - robA NIAGMN_09000 0.79 -0.1 1,749,103 + robA NIAGMN_09000 0.82 -0.8 1,749,104 - robA NIAGMN_09000 0.82 -0.0 1,749,115 - robA NIAGMN_09000 0.84 -2.0 1,749,117 - robA NIAGMN_09000 0.84 -0.1 1,749,167 - robA NIAGMN_09000 0.90 +0.3 1,749,176 + -0.2 1,749,176 + +1.1 1,749,177 - +1.5 1,749,217 + -0.8 1,749,271 + -0.5 1,749,271 + -0.8 1,749,271 + +0.1 1,749,271 + -0.4 1,749,271 + -0.5 1,749,271 + +0.7 1,749,271 + -1.9 1,749,271 + +0.0 1,749,272 - +0.8 1,749,272 - -3.5 1,749,366 + NIAGMN_09005 0.17 -1.0 1,749,375 + NIAGMN_09005 0.19 +0.5 1,749,375 + NIAGMN_09005 0.19 +1.0 1,749,375 + NIAGMN_09005 0.19 +1.5 1,749,375 + NIAGMN_09005 0.19 +1.4 1,749,386 - NIAGMN_09005 0.21 -1.2 1,749,447 + NIAGMN_09005 0.30 -2.1 1,749,556 - NIAGMN_09005 0.47 -1.8 1,749,556 - NIAGMN_09005 0.47 -1.0 1,749,625 - NIAGMN_09005 0.57 -0.4 1,749,652 + NIAGMN_09005 0.62 -0.7 1,749,653 - NIAGMN_09005 0.62 +0.7 1,749,653 - NIAGMN_09005 0.62 -0.7 1,749,734 - NIAGMN_09005 0.74 +1.5 1,749,751 - NIAGMN_09005 0.77 +1.5 1,749,757 - NIAGMN_09005 0.78 -0.8 1,749,757 - NIAGMN_09005 0.78 -0.9 1,749,757 - NIAGMN_09005 0.78 +0.8 1,749,844 - +0.0 1,749,844 - +1.4 1,749,883 + +0.2 1,749,883 + -0.9 1,749,883 + +1.6 1,749,884 - -2.4 1,749,887 + -1.2 1,749,887 + -0.6 1,749,887 + -1.5 1,749,887 + +1.6 1,749,888 - -0.3 1,749,888 - -0.8 1,749,888 - -0.6 1,749,888 - +0.4 1,749,888 - -0.6 1,749,888 - -1.3 1,749,888 - -0.3 1,749,889 + -0.3 1,749,889 + -0.5 1,749,889 + +2.2 1,749,889 + -1.9 1,749,890 - -1.4 1,749,890 - +0.3 1,749,890 - -0.3 1,749,890 - +2.1 1,749,895 + -2.1 1,749,913 + -0.9 1,749,914 - -0.5 1,749,914 - -1.4 1,749,915 + -1.2 1,749,916 - -1.4 1,749,916 - -1.0 1,749,916 - -0.0 1,749,916 - -1.7 1,749,916 - +0.1 1,749,923 + +0.3 1,749,924 - -0.2 1,749,941 + -0.0 1,750,044 + yjjX NIAGMN_09010 0.18 -0.4 1,750,045 - yjjX NIAGMN_09010 0.18 -0.8 1,750,045 - yjjX NIAGMN_09010 0.18 +0.8 1,750,045 - yjjX NIAGMN_09010 0.18 -1.0 1,750,145 + yjjX NIAGMN_09010 0.38 -1.0 1,750,280 + yjjX NIAGMN_09010 0.64 -0.7 1,750,293 - yjjX NIAGMN_09010 0.66 -0.7 1,750,333 - yjjX NIAGMN_09010 0.74 +0.9 1,750,333 - yjjX NIAGMN_09010 0.74 +0.6 1,750,356 + yjjX NIAGMN_09010 0.79 -0.9 1,750,356 + yjjX NIAGMN_09010 0.79 +1.6 1,750,412 - yjjX NIAGMN_09010 0.90 +1.1 1,750,412 - yjjX NIAGMN_09010 0.90 +0.8 1,750,459 + -0.8 1,750,459 + -0.4 1,750,460 - -0.6 1,750,460 - -0.2 1,750,462 + -1.2 1,750,596 - -0.2 1,750,679 + trpR NIAGMN_09015 0.23 +2.1 1,750,679 + trpR NIAGMN_09015 0.23 -0.4 1,750,680 - trpR NIAGMN_09015 0.23 -0.5 1,750,680 - trpR NIAGMN_09015 0.23 +0.7 1,750,692 - trpR NIAGMN_09015 0.27 +1.0 1,750,770 - trpR NIAGMN_09015 0.54 -0.2 1,750,822 - trpR NIAGMN_09015 0.71 -0.5 1,750,822 - trpR NIAGMN_09015 0.71 -0.1 1,750,830 + trpR NIAGMN_09015 0.74 +2.1 1,750,831 - trpR NIAGMN_09015 0.74 +2.4
Or see this region's nucleotide sequence