Strain Fitness in Escherichia coli ECRC102 around NIAGMN_08235

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
1,584,475	+	fimD	NIAGMN_08225	0.87	-0.1
1,584,482	+	fimD	NIAGMN_08225	0.88	-2.2
1,584,542	+	fimD	NIAGMN_08225	0.90	-0.0
1,584,543	-	fimD	NIAGMN_08225	0.90	+0.6
1,584,707	+				+0.5
1,584,707	+				+0.9
1,584,707	+				+0.1
1,584,708	-				+0.4
1,584,708	-				+0.3
1,584,708	-				-1.9
1,584,708	-				-0.1
1,584,763	+				-0.1
1,584,764	-				-0.4
1,584,764	-				+0.2
1,584,764	-				-0.1
1,584,764	-				+1.0
1,584,764	-				-1.1
1,584,764	-				-1.1
1,584,764	-				-2.4
1,584,766	+				+1.8
1,584,767	-				+0.0
1,584,767	-				+0.7
1,584,767	-				-0.6
1,584,767	-				+1.1
1,584,767	-				+0.3
1,584,771	-				+0.4
1,584,779	+				-0.8
1,584,790	+				-1.6
1,584,801	+				-0.8
1,584,802	-				-0.2
1,584,804	+				-0.3
1,584,827	+				-0.1
1,584,827	+				+0.7
1,584,830	+				-0.1
1,584,830	+				-0.5
1,584,830	+				-0.8
1,584,831	-				-1.3
1,584,831	-				-1.4
1,584,833	+				-2.8
1,584,833	+				+2.2
1,584,833	+				+1.4
1,584,833	+				-0.5
1,584,834	-				+0.4
1,584,849	-				-0.1
1,584,889	-	fimA	NIAGMN_08230	0.13	+0.5
1,584,900	+	fimA	NIAGMN_08230	0.15	-0.1
1,584,901	-	fimA	NIAGMN_08230	0.15	+0.7
1,584,911	+	fimA	NIAGMN_08230	0.17	-0.0
1,584,911	+	fimA	NIAGMN_08230	0.17	+0.3
1,584,912	-	fimA	NIAGMN_08230	0.17	+1.0
1,584,912	-	fimA	NIAGMN_08230	0.17	+0.5
1,584,912	-	fimA	NIAGMN_08230	0.17	+0.5
1,584,912	-	fimA	NIAGMN_08230	0.17	-1.1
1,584,912	-	fimA	NIAGMN_08230	0.17	+0.2
1,584,915	-	fimA	NIAGMN_08230	0.18	-0.3
1,584,932	+	fimA	NIAGMN_08230	0.21	+0.5
1,584,932	+	fimA	NIAGMN_08230	0.21	+1.0
1,584,932	+	fimA	NIAGMN_08230	0.21	+1.0
1,584,933	-	fimA	NIAGMN_08230	0.21	+0.5
1,584,936	+	fimA	NIAGMN_08230	0.22	+0.5
1,584,936	+	fimA	NIAGMN_08230	0.22	-1.2
1,584,936	+	fimA	NIAGMN_08230	0.22	-1.1
1,584,936	+	fimA	NIAGMN_08230	0.22	-0.3
1,584,936	+	fimA	NIAGMN_08230	0.22	-2.2
1,584,936	+	fimA	NIAGMN_08230	0.22	+0.2
1,584,936	+	fimA	NIAGMN_08230	0.22	-0.7
1,584,936	+	fimA	NIAGMN_08230	0.22	+0.0
1,584,936	+	fimA	NIAGMN_08230	0.22	-0.5
1,584,936	+	fimA	NIAGMN_08230	0.22	+0.6
1,584,937	-	fimA	NIAGMN_08230	0.22	+2.6
1,584,937	-	fimA	NIAGMN_08230	0.22	-1.3
1,584,937	-	fimA	NIAGMN_08230	0.22	+1.4
1,584,937	-	fimA	NIAGMN_08230	0.22	-0.6
1,584,937	-	fimA	NIAGMN_08230	0.22	+0.0
1,584,937	-	fimA	NIAGMN_08230	0.22	+0.0
1,584,937	-	fimA	NIAGMN_08230	0.22	-0.7
1,584,937	-	fimA	NIAGMN_08230	0.22	+0.1
1,584,937	-	fimA	NIAGMN_08230	0.22	+0.1
1,584,937	-	fimA	NIAGMN_08230	0.22	-1.5
1,584,938	+	fimA	NIAGMN_08230	0.22	+0.0
1,584,969	+	fimA	NIAGMN_08230	0.28	-0.5
1,584,982	+	fimA	NIAGMN_08230	0.30	-0.2
1,584,983	-	fimA	NIAGMN_08230	0.30	-1.6
1,584,983	-	fimA	NIAGMN_08230	0.30	-0.3
1,585,053	+	fimA	NIAGMN_08230	0.43	+0.2
1,585,107	+	fimA	NIAGMN_08230	0.53	-0.6
1,585,107	+	fimA	NIAGMN_08230	0.53	+0.1
1,585,108	-	fimA	NIAGMN_08230	0.53	-1.4
1,585,133	+	fimA	NIAGMN_08230	0.58	-1.0
1,585,134	-	fimA	NIAGMN_08230	0.58	-0.4
1,585,134	-	fimA	NIAGMN_08230	0.58	-2.0
1,585,134	-	fimA	NIAGMN_08230	0.58	+0.1
1,585,183	-	fimA	NIAGMN_08230	0.67	+0.1
1,585,224	+	fimA	NIAGMN_08230	0.74	-2.8
1,585,283	+	fimA	NIAGMN_08230	0.85	+1.8
1,585,348	-				-0.9
1,585,357	+				-1.6
1,585,363	+				+0.1
1,585,364	-				+0.2
1,585,364	-				+1.3
1,585,387	+				-1.5
1,585,401	-				-2.1
1,585,401	-				+0.7
1,585,412	+				-1.6
1,585,412	+				-0.1
1,585,413	-				-0.5
1,585,429	+				-0.5
1,585,429	+				-2.3
1,585,460	+	fimA	NIAGMN_08235	0.13	-1.8
1,585,499	+	fimA	NIAGMN_08235	0.20	+0.4
1,585,505	+	fimA	NIAGMN_08235	0.21	+0.2
1,585,532	+	fimA	NIAGMN_08235	0.25	-0.4
1,585,532	+	fimA	NIAGMN_08235	0.25	-0.5
1,585,532	+	fimA	NIAGMN_08235	0.25	+1.2
1,585,532	+	fimA	NIAGMN_08235	0.25	+0.6
1,585,533	-	fimA	NIAGMN_08235	0.25	+0.4
1,585,533	-	fimA	NIAGMN_08235	0.25	+0.4
1,585,536	-	fimA	NIAGMN_08235	0.26	+0.4
1,585,538	+	fimA	NIAGMN_08235	0.26	+1.5
1,585,573	-	fimA	NIAGMN_08235	0.32	-0.6
1,585,574	+	fimA	NIAGMN_08235	0.32	-0.3
1,585,664	-	fimA	NIAGMN_08235	0.47	+0.1
1,585,664	-	fimA	NIAGMN_08235	0.47	-1.2
1,585,676	+	fimA	NIAGMN_08235	0.49	-0.7
1,585,677	-	fimA	NIAGMN_08235	0.49	-0.9
1,585,677	-	fimA	NIAGMN_08235	0.49	+1.2
1,585,677	-	fimA	NIAGMN_08235	0.49	+0.0
1,585,677	-	fimA	NIAGMN_08235	0.49	+0.7
1,585,677	-	fimA	NIAGMN_08235	0.49	+0.2
1,585,682	+	fimA	NIAGMN_08235	0.50	+1.4
1,585,682	+	fimA	NIAGMN_08235	0.50	+0.4
1,585,682	+	fimA	NIAGMN_08235	0.50	+1.1
1,585,682	+	fimA	NIAGMN_08235	0.50	+0.2
1,585,682	+	fimA	NIAGMN_08235	0.50	-1.3
1,585,682	+	fimA	NIAGMN_08235	0.50	+1.5
1,585,682	+	fimA	NIAGMN_08235	0.50	-0.5
1,585,682	+	fimA	NIAGMN_08235	0.50	-1.1
1,585,682	+	fimA	NIAGMN_08235	0.50	-0.8
1,585,682	+	fimA	NIAGMN_08235	0.50	+0.4
1,585,682	+	fimA	NIAGMN_08235	0.50	+3.5
1,585,683	-	fimA	NIAGMN_08235	0.50	-2.6
1,585,683	-	fimA	NIAGMN_08235	0.50	-0.9
1,585,683	-	fimA	NIAGMN_08235	0.50	-0.0
1,585,683	-	fimA	NIAGMN_08235	0.50	+0.5
1,585,683	-	fimA	NIAGMN_08235	0.50	+0.7
1,585,684	+	fimA	NIAGMN_08235	0.50	+1.4
1,585,684	+	fimA	NIAGMN_08235	0.50	+0.4
1,585,685	-	fimA	NIAGMN_08235	0.50	-0.2
1,585,778	+	fimA	NIAGMN_08235	0.66	+0.0
1,585,785	-	fimA	NIAGMN_08235	0.67	+2.2
1,585,785	-	fimA	NIAGMN_08235	0.67	+1.3
1,585,831	+	fimA	NIAGMN_08235	0.74	+1.6
1,585,933	+				+0.1
1,585,933	+				+0.4
1,585,933	+				-1.8
1,585,934	-				-1.6
1,585,977	+				+0.6
1,585,977	+				+1.0
1,585,977	+				+2.5
1,585,977	+				-0.5
1,585,978	-				-0.1
1,585,978	-				+0.7
1,585,983	+				+0.6
1,585,984	-				-0.5
1,585,984	-				-0.3
1,585,987	-				-0.3
1,586,002	+				+0.5
1,586,002	+				+0.2
1,586,002	+				-0.3
1,586,002	+				+0.0
1,586,002	+				+0.4
1,586,003	-				+2.6
1,586,003	-				+0.5
1,586,003	-				+1.1
1,586,003	-				-0.7
1,586,010	+				+0.0
1,586,023	+				-0.8
1,586,075	+	fimA	NIAGMN_08240	0.12	-0.5
1,586,140	+	fimA	NIAGMN_08240	0.23	-0.2
1,586,143	+	fimA	NIAGMN_08240	0.23	-0.4
1,586,181	-	fimA	NIAGMN_08240	0.30	-0.2
1,586,234	-	fimA	NIAGMN_08240	0.39	-0.9
1,586,351	+	fimA	NIAGMN_08240	0.58	-1.9
1,586,425	+	fimA	NIAGMN_08240	0.71	+0.6
1,586,426	-	fimA	NIAGMN_08240	0.71	-1.8
1,586,463	-	fimA	NIAGMN_08240	0.77	-0.5
1,586,508	-	fimA	NIAGMN_08240	0.85	+0.1
1,586,531	-	fimA	NIAGMN_08240	0.89	-0.5
1,586,573	-				-0.1
1,586,573	-				-0.7
1,586,573	-				-2.6
1,586,583	+				-0.1
1,586,584	-				-0.2
1,586,604	-				-0.1
1,586,608	-				-2.1
1,586,608	-				-0.5
1,586,626	-				+0.4
1,586,642	+				-0.2
1,586,701	+				+0.7
1,586,702	-				-2.7
1,586,703	+				+0.0
1,586,704	-				+0.2
1,586,704	-				+1.4
1,586,705	+				-0.2
1,586,705	+				+1.1
1,586,741	+	fimA	NIAGMN_08245	0.12	+0.8
1,586,741	+	fimA	NIAGMN_08245	0.12	-0.8
1,586,741	+	fimA	NIAGMN_08245	0.12	+0.1
1,586,742	-	fimA	NIAGMN_08245	0.12	-1.8
1,586,742	-	fimA	NIAGMN_08245	0.12	-2.8
1,586,758	-	fimA	NIAGMN_08245	0.14	-1.6
1,586,816	+	fimA	NIAGMN_08245	0.19	-2.8
1,586,816	+	fimA	NIAGMN_08245	0.19	-0.0
1,586,816	+	fimA	NIAGMN_08245	0.19	+0.3
1,586,817	-	fimA	NIAGMN_08245	0.19	+0.3
1,586,828	+	fimA	NIAGMN_08245	0.20	-2.9
1,586,828	+	fimA	NIAGMN_08245	0.20	-0.2
1,586,851	-	fimA	NIAGMN_08245	0.22	-0.5
1,586,851	-	fimA	NIAGMN_08245	0.22	-0.2
1,586,866	-	fimA	NIAGMN_08245	0.23	+1.0
1,586,868	+	fimA	NIAGMN_08245	0.23	-0.2
1,586,868	+	fimA	NIAGMN_08245	0.23	-1.4
1,586,887	-	fimA	NIAGMN_08245	0.25	+3.1
1,586,890	-	fimA	NIAGMN_08245	0.25	-0.4
1,586,906	+	fimA	NIAGMN_08245	0.27	-1.0
1,586,906	+	fimA	NIAGMN_08245	0.27	+0.5
1,586,917	+	fimA	NIAGMN_08245	0.28	+0.7
1,586,917	+	fimA	NIAGMN_08245	0.28	-0.0
1,586,917	+	fimA	NIAGMN_08245	0.28	-1.7
1,586,971	+	fimA	NIAGMN_08245	0.33	-0.1
1,586,984	+	fimA	NIAGMN_08245	0.34	+0.6
1,586,984	+	fimA	NIAGMN_08245	0.34	+0.2
1,586,985	-	fimA	NIAGMN_08245	0.34	+0.9