Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yafC and dkgB overlap by 4 nucleotides dkgB and Asp_trna are separated by 162 nucleotides Asp_trna and 5S_rrna are separated by 54 nucleotides 5S_rrna and 23S_rrna are separated by 94 nucleotides
NIAGMN_07850: yafC - DNA-binding transcriptional regulator YafC, at 1,507,834 to 1,508,748
yafC
NIAGMN_07855: dkgB - 2,5-didehydrogluconate reductase DkgB, at 1,508,745 to 1,509,548
dkgB
NIAGMN_07860: Asp_trna - tRNA-Asp(gtc), at 1,509,711 to 1,509,787
_trna
NIAGMN_07865: 5S_rrna - 5S ribosomal RNA, at 1,509,842 to 1,509,957
_rrna
NIAGMN_07870: 23S_rrna - 23S ribosomal RNA, at 1,510,052 to 1,512,954
_rrna
Position (kb) 1508
1509
1510 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1507.763 kb on + strand at 1507.763 kb on + strand at 1507.794 kb on - strand at 1507.913 kb on + strand at 1508.097 kb on + strand, within yafC at 1508.320 kb on + strand, within yafC at 1508.347 kb on + strand, within yafC at 1508.349 kb on + strand, within yafC at 1508.387 kb on + strand, within yafC at 1508.452 kb on - strand, within yafC at 1508.465 kb on + strand, within yafC at 1508.465 kb on + strand, within yafC at 1508.465 kb on + strand, within yafC at 1508.465 kb on + strand, within yafC at 1508.466 kb on - strand, within yafC at 1508.479 kb on + strand, within yafC at 1508.479 kb on + strand, within yafC at 1508.496 kb on + strand, within yafC at 1508.557 kb on + strand, within yafC at 1508.557 kb on + strand, within yafC at 1508.557 kb on + strand, within yafC at 1508.557 kb on + strand, within yafC at 1508.558 kb on - strand, within yafC at 1508.559 kb on + strand, within yafC at 1508.559 kb on + strand, within yafC at 1508.650 kb on + strand, within yafC at 1508.666 kb on + strand at 1508.746 kb on + strand at 1508.746 kb on + strand at 1508.747 kb on - strand at 1508.882 kb on + strand, within dkgB at 1509.017 kb on - strand, within dkgB at 1509.017 kb on - strand, within dkgB at 1509.017 kb on - strand, within dkgB at 1509.023 kb on + strand, within dkgB at 1509.280 kb on + strand, within dkgB at 1509.414 kb on + strand, within dkgB at 1509.548 kb on + strand at 1509.548 kb on + strand at 1509.552 kb on - strand at 1509.569 kb on - strand at 1509.666 kb on - strand at 1509.705 kb on - strand at 1509.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,507,763 + +0.6 1,507,763 + -0.6 1,507,794 - +0.2 1,507,913 + -0.1 1,508,097 + yafC NIAGMN_07850 0.29 -0.7 1,508,320 + yafC NIAGMN_07850 0.53 -1.1 1,508,347 + yafC NIAGMN_07850 0.56 -0.4 1,508,349 + yafC NIAGMN_07850 0.56 +0.5 1,508,387 + yafC NIAGMN_07850 0.60 +0.7 1,508,452 - yafC NIAGMN_07850 0.68 +0.6 1,508,465 + yafC NIAGMN_07850 0.69 -0.3 1,508,465 + yafC NIAGMN_07850 0.69 -0.4 1,508,465 + yafC NIAGMN_07850 0.69 +0.4 1,508,465 + yafC NIAGMN_07850 0.69 +1.9 1,508,466 - yafC NIAGMN_07850 0.69 -0.8 1,508,479 + yafC NIAGMN_07850 0.70 -0.4 1,508,479 + yafC NIAGMN_07850 0.70 +0.1 1,508,496 + yafC NIAGMN_07850 0.72 +0.4 1,508,557 + yafC NIAGMN_07850 0.79 -0.4 1,508,557 + yafC NIAGMN_07850 0.79 +1.0 1,508,557 + yafC NIAGMN_07850 0.79 +0.1 1,508,557 + yafC NIAGMN_07850 0.79 -2.0 1,508,558 - yafC NIAGMN_07850 0.79 +0.8 1,508,559 + yafC NIAGMN_07850 0.79 +0.1 1,508,559 + yafC NIAGMN_07850 0.79 -1.1 1,508,650 + yafC NIAGMN_07850 0.89 -2.1 1,508,666 + +0.4 1,508,746 + +0.3 1,508,746 + +0.8 1,508,747 - +2.0 1,508,882 + dkgB NIAGMN_07855 0.17 -1.6 1,509,017 - dkgB NIAGMN_07855 0.34 -2.5 1,509,017 - dkgB NIAGMN_07855 0.34 +1.2 1,509,017 - dkgB NIAGMN_07855 0.34 -2.0 1,509,023 + dkgB NIAGMN_07855 0.35 +0.2 1,509,280 + dkgB NIAGMN_07855 0.67 -0.8 1,509,414 + dkgB NIAGMN_07855 0.83 +1.6 1,509,548 + -1.7 1,509,548 + -0.5 1,509,552 - +1.1 1,509,569 - +0.3 1,509,666 - +0.7 1,509,705 - -1.1 1,509,708 - +0.5
Or see this region's nucleotide sequence