Strain Fitness in Escherichia coli ECRC102 around NIAGMN_06645

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
1,272,186	-				+0.5
1,272,510	+				-0.2
1,272,511	-				-2.6
1,272,511	-				+2.3
1,272,563	-	ppnP	NIAGMN_06640	0.25	-1.8
1,272,582	+	ppnP	NIAGMN_06640	0.32	-1.2
1,272,582	+	ppnP	NIAGMN_06640	0.32	-0.7
1,272,582	+	ppnP	NIAGMN_06640	0.32	+0.2
1,272,583	-	ppnP	NIAGMN_06640	0.32	+1.4
1,272,583	-	ppnP	NIAGMN_06640	0.32	-0.7
1,272,611	+	ppnP	NIAGMN_06640	0.42	+0.1
1,272,612	-	ppnP	NIAGMN_06640	0.42	+0.5
1,272,689	-	ppnP	NIAGMN_06640	0.69	-1.1
1,272,757	-				+0.0
1,272,757	-				-1.6
1,272,763	+				-0.2
1,272,764	-				-0.0
1,272,775	+				-0.1
1,272,775	+				-3.2
1,272,802	-				+1.1
1,272,802	-				-0.1
1,272,813	+				+0.4
1,272,813	+				-0.5
1,272,857	-				-0.5
1,272,884	-				+2.5
1,272,884	-				+0.1
1,273,198	-	aroM	NIAGMN_06645	0.52	-0.0
1,273,213	-	aroM	NIAGMN_06645	0.54	+0.7
1,273,215	+	aroM	NIAGMN_06645	0.54	-0.5
1,273,216	-	aroM	NIAGMN_06645	0.54	-1.6
1,273,216	-	aroM	NIAGMN_06645	0.54	-0.5
1,273,216	-	aroM	NIAGMN_06645	0.54	-2.2
1,273,219	-	aroM	NIAGMN_06645	0.55	-0.9
1,273,219	-	aroM	NIAGMN_06645	0.55	-2.5
1,273,237	+	aroM	NIAGMN_06645	0.58	-1.9
1,273,241	-	aroM	NIAGMN_06645	0.58	+1.9
1,273,241	-	aroM	NIAGMN_06645	0.58	+0.9
1,273,241	-	aroM	NIAGMN_06645	0.58	+1.1
1,273,241	-	aroM	NIAGMN_06645	0.58	+1.6
1,273,242	+	aroM	NIAGMN_06645	0.58	+2.2
1,273,242	+	aroM	NIAGMN_06645	0.58	-1.1
1,273,243	-	aroM	NIAGMN_06645	0.58	-1.5
1,273,243	-	aroM	NIAGMN_06645	0.58	-0.5
1,273,243	-	aroM	NIAGMN_06645	0.58	-0.2
1,273,264	-	aroM	NIAGMN_06645	0.62	-0.8
1,273,342	+	aroM	NIAGMN_06645	0.73	-3.7
1,273,406	-	aroM	NIAGMN_06645	0.82	-2.4
1,273,435	-	aroM	NIAGMN_06645	0.87	-2.0
1,273,451	+	aroM	NIAGMN_06645	0.89	-0.0
1,273,452	-	aroM	NIAGMN_06645	0.89	+0.4
1,273,482	+				-1.6
1,273,486	+				-3.0
1,273,487	-				-3.4
1,273,487	-				-0.6
1,273,545	-				-0.1
1,273,545	-				-0.6
1,273,560	-				+0.0
1,273,593	+				-2.2
1,273,593	+				+2.7
1,273,593	+				-1.0
1,273,594	-				-0.0
1,273,594	-				+0.2
1,273,594	-				+0.5
1,273,594	-				+0.8
1,273,603	-				-0.2
1,273,603	-				-0.9
1,273,687	-				-0.6
1,273,869	-	yaiA	NIAGMN_06650	0.45	-0.2
1,273,935	+	yaiA	NIAGMN_06650	0.80	+0.8
1,273,937	+	yaiA	NIAGMN_06650	0.81	+0.1
1,273,937	+	yaiA	NIAGMN_06650	0.81	-0.5
1,273,938	-	yaiA	NIAGMN_06650	0.81	+0.9
1,273,938	-	yaiA	NIAGMN_06650	0.81	-1.5
1,273,938	-	yaiA	NIAGMN_06650	0.81	-0.3
1,273,939	+	yaiA	NIAGMN_06650	0.82	+0.5
1,273,939	+	yaiA	NIAGMN_06650	0.82	+0.9
1,273,939	+	yaiA	NIAGMN_06650	0.82	+0.9
1,273,939	+	yaiA	NIAGMN_06650	0.82	-1.0
1,273,939	+	yaiA	NIAGMN_06650	0.82	-0.6
1,273,939	+	yaiA	NIAGMN_06650	0.82	+0.5
1,273,939	+	yaiA	NIAGMN_06650	0.82	+1.3
1,273,940	-	yaiA	NIAGMN_06650	0.82	+0.4
1,273,940	-	yaiA	NIAGMN_06650	0.82	+1.3
1,273,940	-	yaiA	NIAGMN_06650	0.82	+0.6
1,273,940	-	yaiA	NIAGMN_06650	0.82	+0.4
1,273,940	-	yaiA	NIAGMN_06650	0.82	-0.0
1,273,940	-	yaiA	NIAGMN_06650	0.82	-0.9
1,273,940	-	yaiA	NIAGMN_06650	0.82	-0.6
1,273,940	-	yaiA	NIAGMN_06650	0.82	-1.6
1,273,940	-	yaiA	NIAGMN_06650	0.82	+1.5
1,273,940	-	yaiA	NIAGMN_06650	0.82	+2.6
1,274,003	+				-1.0
1,274,003	+				+1.5
1,274,008	-				-1.3
1,274,008	-				-0.5
1,274,008	-				+0.1
1,274,008	-				-0.3
1,274,008	-				+0.6
1,274,009	+				-1.0
1,274,009	+				-1.2
1,274,101	-	aroL	NIAGMN_06655	0.15	-0.5
1,274,101	-	aroL	NIAGMN_06655	0.15	-1.2
1,274,104	-	aroL	NIAGMN_06655	0.15	-0.1
1,274,104	-	aroL	NIAGMN_06655	0.15	+0.6
1,274,104	-	aroL	NIAGMN_06655	0.15	-0.9
1,274,123	-	aroL	NIAGMN_06655	0.19	-2.1
1,274,123	-	aroL	NIAGMN_06655	0.19	-0.5
1,274,123	-	aroL	NIAGMN_06655	0.19	-3.1
1,274,236	+	aroL	NIAGMN_06655	0.41	-0.2
1,274,253	-	aroL	NIAGMN_06655	0.44	+0.8