Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybeQ and ybeL are separated by 69 nucleotides ybeL and leuS are separated by 235 nucleotides leuS and lptE are separated by 14 nucleotides lptE and holA overlap by 1 nucleotides
NIAGMN_05375: ybeQ - Sel1-repeat-containing protein YbeQ, at 983,524 to 984,111
ybeQ
NIAGMN_05380: ybeL - zinc ribbon-containing protein, at 984,181 to 984,663
ybeL
NIAGMN_05385: leuS - leucine--tRNA ligase, at 984,899 to 987,481
leuS
NIAGMN_05390: lptE - LPS assembly lipoprotein LptE, at 987,496 to 988,077
lptE
NIAGMN_05395: holA - DNA polymerase III subunit delta, at 988,077 to 989,108
holA
Position (kb) 984
985
986
987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 983.971 kb on + strand, within ybeQ at 983.971 kb on + strand, within ybeQ at 983.973 kb on + strand, within ybeQ at 983.985 kb on + strand, within ybeQ at 983.985 kb on + strand, within ybeQ at 983.985 kb on + strand, within ybeQ at 983.986 kb on - strand, within ybeQ at 983.989 kb on + strand, within ybeQ at 983.989 kb on + strand, within ybeQ at 983.990 kb on - strand, within ybeQ at 983.990 kb on - strand, within ybeQ at 984.104 kb on + strand at 984.104 kb on + strand at 984.109 kb on + strand at 984.110 kb on - strand at 984.115 kb on + strand at 984.180 kb on - strand at 984.233 kb on - strand, within ybeL at 984.254 kb on + strand, within ybeL at 984.255 kb on - strand, within ybeL at 984.323 kb on + strand, within ybeL at 984.324 kb on - strand, within ybeL at 984.468 kb on - strand, within ybeL at 984.468 kb on - strand, within ybeL at 984.468 kb on - strand, within ybeL at 984.468 kb on - strand, within ybeL at 984.468 kb on - strand, within ybeL at 984.554 kb on - strand, within ybeL at 984.645 kb on - strand at 984.693 kb on - strand at 984.694 kb on + strand at 984.695 kb on - strand at 984.695 kb on - strand at 984.695 kb on - strand at 984.697 kb on + strand at 984.698 kb on - strand at 984.698 kb on - strand at 984.700 kb on + strand at 984.701 kb on - strand at 984.701 kb on - strand at 984.726 kb on + strand at 984.727 kb on - strand at 984.729 kb on + strand at 984.751 kb on + strand at 984.752 kb on - strand at 984.762 kb on + strand at 984.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 983,971 + ybeQ NIAGMN_05375 0.76 -0.1 983,971 + ybeQ NIAGMN_05375 0.76 +1.2 983,973 + ybeQ NIAGMN_05375 0.76 -1.2 983,985 + ybeQ NIAGMN_05375 0.78 +0.9 983,985 + ybeQ NIAGMN_05375 0.78 +1.1 983,985 + ybeQ NIAGMN_05375 0.78 +0.0 983,986 - ybeQ NIAGMN_05375 0.79 +0.2 983,989 + ybeQ NIAGMN_05375 0.79 +1.4 983,989 + ybeQ NIAGMN_05375 0.79 +0.3 983,990 - ybeQ NIAGMN_05375 0.79 +0.7 983,990 - ybeQ NIAGMN_05375 0.79 -0.2 984,104 + -0.8 984,104 + +0.4 984,109 + -0.3 984,110 - +0.1 984,115 + +0.0 984,180 - +0.5 984,233 - ybeL NIAGMN_05380 0.11 +1.2 984,254 + ybeL NIAGMN_05380 0.15 -1.0 984,255 - ybeL NIAGMN_05380 0.15 -2.2 984,323 + ybeL NIAGMN_05380 0.29 -0.4 984,324 - ybeL NIAGMN_05380 0.30 -0.8 984,468 - ybeL NIAGMN_05380 0.59 +0.4 984,468 - ybeL NIAGMN_05380 0.59 -0.2 984,468 - ybeL NIAGMN_05380 0.59 +2.3 984,468 - ybeL NIAGMN_05380 0.59 +1.4 984,468 - ybeL NIAGMN_05380 0.59 +1.3 984,554 - ybeL NIAGMN_05380 0.77 -0.1 984,645 - -0.6 984,693 - -0.4 984,694 + -1.4 984,695 - -0.3 984,695 - +0.1 984,695 - +0.5 984,697 + -0.4 984,698 - -0.1 984,698 - -0.8 984,700 + +0.1 984,701 - +0.3 984,701 - -0.3 984,726 + +1.2 984,727 - -0.5 984,729 + -1.5 984,751 + -0.1 984,752 - -0.5 984,762 + -3.1 984,763 - +0.1
Or see this region's nucleotide sequence