Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_05035 and abrB are separated by 148 nucleotides abrB and nei overlap by 4 nucleotides nei and pxpA are separated by 35 nucleotides
NIAGMN_05035: NIAGMN_05035 - Fimbrial protein, at 915,415 to 916,476
_05035
NIAGMN_05040: abrB - Putative regulator AbrB, at 916,625 to 917,671
abrB
NIAGMN_05045: nei - endonuclease VIII, at 917,668 to 918,459
nei
NIAGMN_05050: pxpA - 5-oxoprolinase subunit PxpA, at 918,495 to 919,229
pxpA
Position (kb) 916
917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 915.718 kb on + strand, within NIAGMN_05035 at 915.719 kb on - strand, within NIAGMN_05035 at 915.734 kb on - strand, within NIAGMN_05035 at 915.786 kb on + strand, within NIAGMN_05035 at 915.799 kb on - strand, within NIAGMN_05035 at 915.799 kb on - strand, within NIAGMN_05035 at 915.840 kb on + strand, within NIAGMN_05035 at 915.868 kb on - strand, within NIAGMN_05035 at 916.231 kb on + strand, within NIAGMN_05035 at 916.322 kb on - strand, within NIAGMN_05035 at 916.337 kb on - strand, within NIAGMN_05035 at 916.345 kb on + strand, within NIAGMN_05035 at 916.345 kb on + strand, within NIAGMN_05035 at 916.375 kb on + strand at 916.387 kb on + strand at 916.443 kb on + strand at 916.609 kb on - strand at 916.651 kb on - strand at 916.651 kb on - strand at 916.651 kb on - strand at 916.675 kb on + strand at 916.862 kb on - strand, within abrB at 916.878 kb on + strand, within abrB at 916.883 kb on - strand, within abrB at 916.887 kb on + strand, within abrB at 916.939 kb on + strand, within abrB at 916.939 kb on + strand, within abrB at 916.939 kb on + strand, within abrB at 916.939 kb on + strand, within abrB at 916.940 kb on - strand, within abrB at 917.141 kb on - strand, within abrB at 917.167 kb on + strand, within abrB at 917.168 kb on - strand, within abrB at 917.183 kb on - strand, within abrB at 917.305 kb on - strand, within abrB at 917.330 kb on + strand, within abrB at 917.330 kb on + strand, within abrB at 917.330 kb on + strand, within abrB at 917.330 kb on + strand, within abrB at 917.330 kb on + strand, within abrB at 917.330 kb on + strand, within abrB at 917.330 kb on + strand, within abrB at 917.330 kb on + strand, within abrB at 917.330 kb on + strand, within abrB at 917.330 kb on + strand, within abrB at 917.330 kb on + strand, within abrB at 917.331 kb on - strand, within abrB at 917.331 kb on - strand, within abrB at 917.331 kb on - strand, within abrB at 917.331 kb on - strand, within abrB at 917.331 kb on - strand, within abrB at 917.489 kb on - strand, within abrB at 917.499 kb on - strand, within abrB at 917.649 kb on - strand at 917.649 kb on - strand at 917.803 kb on - strand, within nei at 917.951 kb on + strand, within nei at 918.029 kb on - strand, within nei at 918.092 kb on - strand, within nei at 918.092 kb on - strand, within nei at 918.092 kb on - strand, within nei at 918.147 kb on + strand, within nei at 918.147 kb on + strand, within nei at 918.148 kb on - strand, within nei at 918.194 kb on - strand, within nei at 918.194 kb on - strand, within nei at 918.245 kb on + strand, within nei at 918.264 kb on - strand, within nei at 918.271 kb on + strand, within nei at 918.272 kb on - strand, within nei at 918.272 kb on - strand, within nei at 918.293 kb on - strand, within nei at 918.293 kb on - strand, within nei at 918.304 kb on - strand, within nei at 918.484 kb on - strand at 918.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 915,718 + NIAGMN_05035 0.29 -0.5 915,719 - NIAGMN_05035 0.29 -1.0 915,734 - NIAGMN_05035 0.30 -0.4 915,786 + NIAGMN_05035 0.35 -1.7 915,799 - NIAGMN_05035 0.36 -0.1 915,799 - NIAGMN_05035 0.36 +0.1 915,840 + NIAGMN_05035 0.40 +0.2 915,868 - NIAGMN_05035 0.43 +0.0 916,231 + NIAGMN_05035 0.77 -0.6 916,322 - NIAGMN_05035 0.85 -1.4 916,337 - NIAGMN_05035 0.87 -0.1 916,345 + NIAGMN_05035 0.88 -0.2 916,345 + NIAGMN_05035 0.88 -2.6 916,375 + -1.1 916,387 + -2.8 916,443 + -0.0 916,609 - -2.2 916,651 - -1.0 916,651 - +0.1 916,651 - -0.3 916,675 + -0.1 916,862 - abrB NIAGMN_05040 0.23 -1.1 916,878 + abrB NIAGMN_05040 0.24 +0.8 916,883 - abrB NIAGMN_05040 0.25 +0.6 916,887 + abrB NIAGMN_05040 0.25 +0.2 916,939 + abrB NIAGMN_05040 0.30 +2.2 916,939 + abrB NIAGMN_05040 0.30 -0.7 916,939 + abrB NIAGMN_05040 0.30 +2.0 916,939 + abrB NIAGMN_05040 0.30 -1.6 916,940 - abrB NIAGMN_05040 0.30 -0.0 917,141 - abrB NIAGMN_05040 0.49 +0.2 917,167 + abrB NIAGMN_05040 0.52 +0.8 917,168 - abrB NIAGMN_05040 0.52 +1.2 917,183 - abrB NIAGMN_05040 0.53 +1.4 917,305 - abrB NIAGMN_05040 0.65 -2.1 917,330 + abrB NIAGMN_05040 0.67 +0.0 917,330 + abrB NIAGMN_05040 0.67 -2.3 917,330 + abrB NIAGMN_05040 0.67 -0.5 917,330 + abrB NIAGMN_05040 0.67 -1.5 917,330 + abrB NIAGMN_05040 0.67 -0.4 917,330 + abrB NIAGMN_05040 0.67 -1.7 917,330 + abrB NIAGMN_05040 0.67 -0.3 917,330 + abrB NIAGMN_05040 0.67 +0.6 917,330 + abrB NIAGMN_05040 0.67 -0.5 917,330 + abrB NIAGMN_05040 0.67 +0.5 917,330 + abrB NIAGMN_05040 0.67 +1.8 917,331 - abrB NIAGMN_05040 0.67 -3.2 917,331 - abrB NIAGMN_05040 0.67 -1.4 917,331 - abrB NIAGMN_05040 0.67 +1.4 917,331 - abrB NIAGMN_05040 0.67 +0.1 917,331 - abrB NIAGMN_05040 0.67 +0.5 917,489 - abrB NIAGMN_05040 0.83 +0.1 917,499 - abrB NIAGMN_05040 0.83 +1.5 917,649 - -0.6 917,649 - -1.1 917,803 - nei NIAGMN_05045 0.17 -0.1 917,951 + nei NIAGMN_05045 0.36 +0.1 918,029 - nei NIAGMN_05045 0.46 +0.1 918,092 - nei NIAGMN_05045 0.54 +0.4 918,092 - nei NIAGMN_05045 0.54 -1.0 918,092 - nei NIAGMN_05045 0.54 +0.4 918,147 + nei NIAGMN_05045 0.60 +0.4 918,147 + nei NIAGMN_05045 0.60 -0.8 918,148 - nei NIAGMN_05045 0.61 -0.9 918,194 - nei NIAGMN_05045 0.66 +0.6 918,194 - nei NIAGMN_05045 0.66 +1.3 918,245 + nei NIAGMN_05045 0.73 +0.7 918,264 - nei NIAGMN_05045 0.75 +0.1 918,271 + nei NIAGMN_05045 0.76 -1.3 918,272 - nei NIAGMN_05045 0.76 -0.3 918,272 - nei NIAGMN_05045 0.76 +0.3 918,293 - nei NIAGMN_05045 0.79 -0.4 918,293 - nei NIAGMN_05045 0.79 -2.5 918,304 - nei NIAGMN_05045 0.80 -0.5 918,484 - -0.9 918,538 - -0.8
Or see this region's nucleotide sequence